3KTI
Structure of ClpP in complex with ADEP1
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004176 | molecular_function | ATP-dependent peptidase activity |
A | 0004252 | molecular_function | serine-type endopeptidase activity |
A | 0005737 | cellular_component | cytoplasm |
A | 0006508 | biological_process | proteolysis |
A | 0006515 | biological_process | protein quality control for misfolded or incompletely synthesized proteins |
A | 0008236 | molecular_function | serine-type peptidase activity |
A | 0009368 | cellular_component | endopeptidase Clp complex |
A | 0042802 | molecular_function | identical protein binding |
A | 0051117 | molecular_function | ATPase binding |
B | 0004176 | molecular_function | ATP-dependent peptidase activity |
B | 0004252 | molecular_function | serine-type endopeptidase activity |
B | 0005737 | cellular_component | cytoplasm |
B | 0006508 | biological_process | proteolysis |
B | 0006515 | biological_process | protein quality control for misfolded or incompletely synthesized proteins |
B | 0008236 | molecular_function | serine-type peptidase activity |
B | 0009368 | cellular_component | endopeptidase Clp complex |
B | 0042802 | molecular_function | identical protein binding |
B | 0051117 | molecular_function | ATPase binding |
C | 0004176 | molecular_function | ATP-dependent peptidase activity |
C | 0004252 | molecular_function | serine-type endopeptidase activity |
C | 0005737 | cellular_component | cytoplasm |
C | 0006508 | biological_process | proteolysis |
C | 0006515 | biological_process | protein quality control for misfolded or incompletely synthesized proteins |
C | 0008236 | molecular_function | serine-type peptidase activity |
C | 0009368 | cellular_component | endopeptidase Clp complex |
C | 0042802 | molecular_function | identical protein binding |
C | 0051117 | molecular_function | ATPase binding |
D | 0004176 | molecular_function | ATP-dependent peptidase activity |
D | 0004252 | molecular_function | serine-type endopeptidase activity |
D | 0005737 | cellular_component | cytoplasm |
D | 0006508 | biological_process | proteolysis |
D | 0006515 | biological_process | protein quality control for misfolded or incompletely synthesized proteins |
D | 0008236 | molecular_function | serine-type peptidase activity |
D | 0009368 | cellular_component | endopeptidase Clp complex |
D | 0042802 | molecular_function | identical protein binding |
D | 0051117 | molecular_function | ATPase binding |
E | 0004176 | molecular_function | ATP-dependent peptidase activity |
E | 0004252 | molecular_function | serine-type endopeptidase activity |
E | 0005737 | cellular_component | cytoplasm |
E | 0006508 | biological_process | proteolysis |
E | 0006515 | biological_process | protein quality control for misfolded or incompletely synthesized proteins |
E | 0008236 | molecular_function | serine-type peptidase activity |
E | 0009368 | cellular_component | endopeptidase Clp complex |
E | 0042802 | molecular_function | identical protein binding |
E | 0051117 | molecular_function | ATPase binding |
F | 0004176 | molecular_function | ATP-dependent peptidase activity |
F | 0004252 | molecular_function | serine-type endopeptidase activity |
F | 0005737 | cellular_component | cytoplasm |
F | 0006508 | biological_process | proteolysis |
F | 0006515 | biological_process | protein quality control for misfolded or incompletely synthesized proteins |
F | 0008236 | molecular_function | serine-type peptidase activity |
F | 0009368 | cellular_component | endopeptidase Clp complex |
F | 0042802 | molecular_function | identical protein binding |
F | 0051117 | molecular_function | ATPase binding |
G | 0004176 | molecular_function | ATP-dependent peptidase activity |
G | 0004252 | molecular_function | serine-type endopeptidase activity |
G | 0005737 | cellular_component | cytoplasm |
G | 0006508 | biological_process | proteolysis |
G | 0006515 | biological_process | protein quality control for misfolded or incompletely synthesized proteins |
G | 0008236 | molecular_function | serine-type peptidase activity |
G | 0009368 | cellular_component | endopeptidase Clp complex |
G | 0042802 | molecular_function | identical protein binding |
G | 0051117 | molecular_function | ATPase binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE DMS A 301 |
Chain | Residue |
A | SER97 |
A | ILE121 |
A | HIS122 |
A | LEU153 |
site_id | AC2 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE NHE A 501 |
Chain | Residue |
A | HOH612 |
B | MET94 |
A | SER69 |
A | ILE70 |
A | THR71 |
A | ARG141 |
A | HOH238 |
site_id | AC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE DMS B 302 |
Chain | Residue |
B | ILE121 |
B | HIS122 |
B | LEU153 |
site_id | AC4 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE NHE B 502 |
Chain | Residue |
B | ILE70 |
B | THR71 |
B | ARG141 |
B | HOH403 |
B | HOH517 |
C | PRO66 |
C | MET94 |
site_id | AC5 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE DMS C 303 |
Chain | Residue |
C | ILE121 |
C | HIS122 |
C | LEU153 |
site_id | AC6 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE NHE C 503 |
Chain | Residue |
C | SER69 |
C | ILE70 |
C | THR71 |
C | ARG141 |
C | HOH214 |
C | HOH663 |
D | PRO66 |
site_id | AC7 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE DMS D 304 |
Chain | Residue |
D | SER97 |
D | ILE121 |
D | HIS122 |
D | LEU153 |
site_id | AC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE NHE D 504 |
Chain | Residue |
D | ILE70 |
D | THR71 |
D | ARG141 |
D | HOH400 |
E | PRO66 |
E | MET94 |
site_id | AC9 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE DMS E 305 |
Chain | Residue |
E | ILE121 |
E | HIS122 |
site_id | BC1 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE NHE E 505 |
Chain | Residue |
E | SER69 |
E | ILE70 |
E | THR71 |
E | ARG141 |
E | HOH409 |
site_id | BC2 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE DMS F 306 |
Chain | Residue |
F | SER97 |
F | ILE121 |
F | HIS122 |
site_id | BC3 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE NHE F 506 |
Chain | Residue |
F | SER69 |
F | ILE70 |
F | THR71 |
F | ARG141 |
F | LEU145 |
F | HOH394 |
F | HOH492 |
G | PRO66 |
G | MET94 |
site_id | BC4 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE DMS G 307 |
Chain | Residue |
G | ILE121 |
G | HIS122 |
site_id | BC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE NHE G 507 |
Chain | Residue |
A | PRO66 |
G | SER69 |
G | ILE70 |
G | THR71 |
G | ARG141 |
site_id | BC6 |
Number of Residues | 13 |
Details | BINDING SITE FOR CHAIN H OF ACYLDEPSIPEPTIDE 1 |
Chain | Residue |
A | ALA52 |
A | THR79 |
A | PHE82 |
A | HOH485 |
B | ARG22 |
B | ASP26 |
B | SER60 |
B | TYR62 |
B | ILE90 |
B | ILE92 |
B | LYS110 |
B | TYR112 |
B | LEU189 |
site_id | BC7 |
Number of Residues | 15 |
Details | BINDING SITE FOR CHAIN I OF ACYLDEPSIPEPTIDE 1 |
Chain | Residue |
A | ARG22 |
A | ASP26 |
A | GLU58 |
A | SER60 |
A | TYR62 |
A | ILE90 |
A | ILE92 |
A | LYS110 |
A | TYR112 |
A | LEU114 |
A | LEU189 |
G | LEU48 |
G | ALA52 |
G | THR79 |
G | PHE82 |
site_id | BC8 |
Number of Residues | 10 |
Details | BINDING SITE FOR CHAIN J OF ACYLDEPSIPEPTIDE 1 |
Chain | Residue |
F | TYR62 |
F | ILE90 |
F | LYS110 |
F | TYR112 |
F | LEU114 |
F | LEU189 |
E | THR79 |
E | PHE82 |
F | ASP26 |
F | SER60 |
site_id | BC9 |
Number of Residues | 12 |
Details | BINDING SITE FOR CHAIN K OF ACYLDEPSIPEPTIDE 1 |
Chain | Residue |
B | ALA52 |
B | THR79 |
B | PHE82 |
C | ARG22 |
C | ASP26 |
C | GLU58 |
C | SER60 |
C | TYR62 |
C | ILE90 |
C | LYS110 |
C | TYR112 |
C | LEU189 |
site_id | CC1 |
Number of Residues | 13 |
Details | BINDING SITE FOR CHAIN L OF ACYLDEPSIPEPTIDE 1 |
Chain | Residue |
C | THR79 |
C | PHE82 |
D | ARG22 |
D | ASP26 |
D | ILE28 |
D | GLU58 |
D | SER60 |
D | TYR62 |
D | ILE90 |
D | ILE92 |
D | TYR112 |
D | LEU189 |
D | HOH410 |
site_id | CC2 |
Number of Residues | 14 |
Details | BINDING SITE FOR CHAIN M OF ACYLDEPSIPEPTIDE 1 |
Chain | Residue |
D | THR79 |
D | PHE82 |
D | HOH236 |
E | ARG22 |
E | LEU23 |
E | ASP26 |
E | SER60 |
E | TYR62 |
E | ILE90 |
E | ILE92 |
E | LYS110 |
E | TYR112 |
E | LEU114 |
E | LEU189 |
site_id | CC3 |
Number of Residues | 15 |
Details | BINDING SITE FOR CHAIN N OF ACYLDEPSIPEPTIDE 1 |
Chain | Residue |
F | LEU48 |
F | THR79 |
F | PHE82 |
F | HOH238 |
G | ARG22 |
G | ASP26 |
G | ILE28 |
G | SER60 |
G | TYR62 |
G | ILE90 |
G | TYR112 |
G | LEU114 |
G | LEU189 |
N | HOH420 |
N | HOH561 |
Functional Information from PROSITE/UniProt
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 7 |
Details | ACT_SITE: Nucleophile => ECO:0000255|HAMAP-Rule:MF_00444, ECO:0000305|PubMed:22080375 |
Chain | Residue | Details |
A | SER97 | |
B | SER97 | |
C | SER97 | |
D | SER97 | |
E | SER97 | |
F | SER97 | |
G | SER97 |
site_id | SWS_FT_FI2 |
Number of Residues | 7 |
Details | ACT_SITE: ACT_SITE => ECO:0000255|HAMAP-Rule:MF_00444, ECO:0000305|PubMed:22080375 |
Chain | Residue | Details |
A | HIS122 | |
B | HIS122 | |
C | HIS122 | |
D | HIS122 | |
E | HIS122 | |
F | HIS122 | |
G | HIS122 |