3KS7
Crystal structure of Putative Peptide:N-glycosidase F (PNGase F) (YP_210507.1) from Bacteroides fragilis NCTC 9343 at 2.30 A resolution
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003824 | molecular_function | catalytic activity |
A | 0016715 | molecular_function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen |
B | 0003824 | molecular_function | catalytic activity |
B | 0016715 | molecular_function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen |
C | 0003824 | molecular_function | catalytic activity |
C | 0016715 | molecular_function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen |
D | 0003824 | molecular_function | catalytic activity |
D | 0016715 | molecular_function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE IOD A 6 |
Chain | Residue |
A | ASN41 |
site_id | AC2 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE CL A 9 |
Chain | Residue |
A | GLU134 |
site_id | AC3 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE CL A 11 |
Chain | Residue |
A | ARG97 |
site_id | AC4 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE CL A 12 |
Chain | Residue |
A | ARG97 |
site_id | AC5 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE EDO A 416 |
Chain | Residue |
A | EDO417 |
site_id | AC6 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE EDO A 417 |
Chain | Residue |
A | EDO416 |
site_id | AC7 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE EDO A 418 |
Chain | Residue |
A | GLU373 |
A | EDO420 |
site_id | AC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO A 419 |
Chain | Residue |
A | PRO46 |
A | ASP47 |
A | SER214 |
C | TRP212 |
A | SER45 |
site_id | AC9 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO A 420 |
Chain | Residue |
A | ILE312 |
A | PRO313 |
A | TRP314 |
A | ASN363 |
A | GLU373 |
A | EDO418 |
site_id | BC1 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE EDO A 421 |
Chain | Residue |
A | ASN363 |
A | VAL371 |
site_id | BC2 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE IOD B 1 |
Chain | Residue |
A | VAL330 |
B | SER338 |
site_id | BC3 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE CL B 8 |
Chain | Residue |
B | ARG97 |
site_id | BC4 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE CL B 16 |
Chain | Residue |
B | ASN167 |
B | ASP168 |
site_id | BC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO B 416 |
Chain | Residue |
B | THR379 |
D | ASN39 |
D | THR90 |
D | ASN185 |
D | LEU218 |
D | ASN220 |
site_id | BC6 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE EDO B 417 |
Chain | Residue |
B | SER320 |
B | ARG323 |
site_id | BC7 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE EDO B 418 |
Chain | Residue |
B | ASN363 |
B | VAL371 |
site_id | BC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO B 419 |
Chain | Residue |
B | ILE312 |
B | PRO313 |
B | TRP314 |
B | ASN363 |
B | GLU373 |
site_id | BC9 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO B 420 |
Chain | Residue |
B | SER289 |
B | EDO421 |
B | HOH544 |
site_id | CC1 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE EDO B 421 |
Chain | Residue |
B | EDO420 |
site_id | CC2 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE CL C 10 |
Chain | Residue |
C | THR268 |
site_id | CC3 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE CL C 13 |
Chain | Residue |
C | ARG97 |
site_id | CC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO C 416 |
Chain | Residue |
C | SER320 |
C | ARG323 |
D | SER320 |
site_id | CC5 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE EDO C 417 |
Chain | Residue |
C | ASN66 |
C | HOH464 |
site_id | CC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO C 418 |
Chain | Residue |
A | ASN185 |
A | LEU218 |
A | ASN220 |
C | THR379 |
site_id | CC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO C 419 |
Chain | Residue |
C | ASN39 |
C | ASN185 |
C | ASN220 |
site_id | CC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO C 420 |
Chain | Residue |
A | GLY161 |
A | HIS162 |
C | GLY272 |
C | ALA273 |
C | LEU380 |
site_id | CC9 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE IOD D 3 |
Chain | Residue |
D | SER338 |
site_id | DC1 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE IOD D 7 |
Chain | Residue |
D | GLY329 |
site_id | DC2 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE CL D 17 |
Chain | Residue |
D | ARG97 |
site_id | DC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO D 18 |
Chain | Residue |
D | LYS100 |
D | ASP210 |
D | TYR254 |
site_id | DC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO D 416 |
Chain | Residue |
D | TRP98 |
D | LYS100 |
D | THR213 |
D | HOH428 |
site_id | DC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO D 417 |
Chain | Residue |
B | TRP212 |
D | PHE44 |
D | TRP212 |
D | THR213 |
D | SER214 |
site_id | DC6 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE EDO D 418 |
Chain | Residue |
D | GLY287 |
site_id | DC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO D 419 |
Chain | Residue |
D | LYS29 |
D | PRO77 |
D | GLU78 |