3KS7
Crystal structure of Putative Peptide:N-glycosidase F (PNGase F) (YP_210507.1) from Bacteroides fragilis NCTC 9343 at 2.30 A resolution
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003824 | molecular_function | catalytic activity |
| A | 0016715 | molecular_function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen |
| B | 0003824 | molecular_function | catalytic activity |
| B | 0016715 | molecular_function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen |
| C | 0003824 | molecular_function | catalytic activity |
| C | 0016715 | molecular_function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen |
| D | 0003824 | molecular_function | catalytic activity |
| D | 0016715 | molecular_function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE IOD A 6 |
| Chain | Residue |
| A | ASN41 |
| site_id | AC2 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE CL A 9 |
| Chain | Residue |
| A | GLU134 |
| site_id | AC3 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE CL A 11 |
| Chain | Residue |
| A | ARG97 |
| site_id | AC4 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE CL A 12 |
| Chain | Residue |
| A | ARG97 |
| site_id | AC5 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE EDO A 416 |
| Chain | Residue |
| A | EDO417 |
| site_id | AC6 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE EDO A 417 |
| Chain | Residue |
| A | EDO416 |
| site_id | AC7 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE EDO A 418 |
| Chain | Residue |
| A | GLU373 |
| A | EDO420 |
| site_id | AC8 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE EDO A 419 |
| Chain | Residue |
| A | PRO46 |
| A | ASP47 |
| A | SER214 |
| C | TRP212 |
| A | SER45 |
| site_id | AC9 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE EDO A 420 |
| Chain | Residue |
| A | ILE312 |
| A | PRO313 |
| A | TRP314 |
| A | ASN363 |
| A | GLU373 |
| A | EDO418 |
| site_id | BC1 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE EDO A 421 |
| Chain | Residue |
| A | ASN363 |
| A | VAL371 |
| site_id | BC2 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE IOD B 1 |
| Chain | Residue |
| A | VAL330 |
| B | SER338 |
| site_id | BC3 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE CL B 8 |
| Chain | Residue |
| B | ARG97 |
| site_id | BC4 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CL B 16 |
| Chain | Residue |
| B | ASN167 |
| B | ASP168 |
| site_id | BC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE EDO B 416 |
| Chain | Residue |
| B | THR379 |
| D | ASN39 |
| D | THR90 |
| D | ASN185 |
| D | LEU218 |
| D | ASN220 |
| site_id | BC6 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE EDO B 417 |
| Chain | Residue |
| B | SER320 |
| B | ARG323 |
| site_id | BC7 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE EDO B 418 |
| Chain | Residue |
| B | ASN363 |
| B | VAL371 |
| site_id | BC8 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE EDO B 419 |
| Chain | Residue |
| B | ILE312 |
| B | PRO313 |
| B | TRP314 |
| B | ASN363 |
| B | GLU373 |
| site_id | BC9 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE EDO B 420 |
| Chain | Residue |
| B | SER289 |
| B | EDO421 |
| B | HOH544 |
| site_id | CC1 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE EDO B 421 |
| Chain | Residue |
| B | EDO420 |
| site_id | CC2 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE CL C 10 |
| Chain | Residue |
| C | THR268 |
| site_id | CC3 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE CL C 13 |
| Chain | Residue |
| C | ARG97 |
| site_id | CC4 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE EDO C 416 |
| Chain | Residue |
| C | SER320 |
| C | ARG323 |
| D | SER320 |
| site_id | CC5 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE EDO C 417 |
| Chain | Residue |
| C | ASN66 |
| C | HOH464 |
| site_id | CC6 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE EDO C 418 |
| Chain | Residue |
| A | ASN185 |
| A | LEU218 |
| A | ASN220 |
| C | THR379 |
| site_id | CC7 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE EDO C 419 |
| Chain | Residue |
| C | ASN39 |
| C | ASN185 |
| C | ASN220 |
| site_id | CC8 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE EDO C 420 |
| Chain | Residue |
| A | GLY161 |
| A | HIS162 |
| C | GLY272 |
| C | ALA273 |
| C | LEU380 |
| site_id | CC9 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE IOD D 3 |
| Chain | Residue |
| D | SER338 |
| site_id | DC1 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE IOD D 7 |
| Chain | Residue |
| D | GLY329 |
| site_id | DC2 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE CL D 17 |
| Chain | Residue |
| D | ARG97 |
| site_id | DC3 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE EDO D 18 |
| Chain | Residue |
| D | LYS100 |
| D | ASP210 |
| D | TYR254 |
| site_id | DC4 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE EDO D 416 |
| Chain | Residue |
| D | TRP98 |
| D | LYS100 |
| D | THR213 |
| D | HOH428 |
| site_id | DC5 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE EDO D 417 |
| Chain | Residue |
| B | TRP212 |
| D | PHE44 |
| D | TRP212 |
| D | THR213 |
| D | SER214 |
| site_id | DC6 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE EDO D 418 |
| Chain | Residue |
| D | GLY287 |
| site_id | DC7 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE EDO D 419 |
| Chain | Residue |
| D | LYS29 |
| D | PRO77 |
| D | GLU78 |
Catalytic Information from CSA
| site_id | CSA1 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1pgs |
| Chain | Residue | Details |
| A | GLU134 | |
| A | GLU293 |
| site_id | CSA2 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1pgs |
| Chain | Residue | Details |
| B | GLU134 | |
| B | GLU293 |
| site_id | CSA3 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1pgs |
| Chain | Residue | Details |
| C | GLU134 | |
| C | GLU293 |
| site_id | CSA4 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1pgs |
| Chain | Residue | Details |
| D | GLU134 | |
| D | GLU293 |
