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3KS5

Crystal structure of Putative glycerophosphoryl diester phosphodiesterase (17743486) from AGROBACTERIUM TUMEFACIENS str. C58 (Dupont) at 2.05 A resolution

Functional Information from GO Data
ChainGOidnamespacecontents
A0006629biological_processlipid metabolic process
A0008081molecular_functionphosphoric diester hydrolase activity
A0046872molecular_functionmetal ion binding
B0006629biological_processlipid metabolic process
B0008081molecular_functionphosphoric diester hydrolase activity
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FE A 250
ChainResidue
AGLU34
AASP36
AGLU104
AACT251
AACT252
AHOH268

site_idAC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE ACT A 251
ChainResidue
AGLU104
ALYS106
AFE250
AACT252
AHOH288
AHIS7
AARG8
AHIS49

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE ACT A 252
ChainResidue
AHIS7
AGLU34
AGLU104
ALEU158
ATHR229
AFE250
AACT251
AHOH316

site_idAC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE ACT A 253
ChainResidue
AGLN165

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ACT A 254
ChainResidue
AMSE196
AGLN200
AASP205
APHE206
ALYS226

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 255
ChainResidue
ASER160
APRO161
ASER162
BSER162
BGLN166

site_idAC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 256
ChainResidue
AARG8
AASP16
AHIS48
AHIS49
AASP50
ATHR56
AHOH286
AHOH301

site_idAC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 257
ChainResidue
AGLU174
BMSE1
BGLU31
BARG240
BARG244
BHOH276
BHOH374

site_idAC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 258
ChainResidue
ALEU167
AGLY168
AGLY170
AALA171
AHOH315
BALA142
BHOH414

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 259
ChainResidue
AGLY0
AMSE1
ATHR2
AGLY224
AHOH357

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FE B 250
ChainResidue
BGLU34
BASP36
BGLU104
BACT251
BACT252
BHOH260

site_idBC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE ACT B 251
ChainResidue
BHIS7
BARG8
BHIS49
BGLU104
BLYS106
BFE250
BACT252
BHOH382

site_idBC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE ACT B 252
ChainResidue
BHIS7
BGLU34
BGLU104
BLEU158
BTRP209
BTHR229
BFE250
BACT251
BHOH297

site_idBC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ACT B 253
ChainResidue
ALYS106
APRO107
APHE139
AHOH356
BGLN165
BGLN166

site_idBC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B 254
ChainResidue
AASP145
AHOH322
BLEU167
BGLY168
BGLY170
BALA171
BHOH428

site_idBC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 255
ChainResidue
BASP50
BTHR56
BHOH271
BARG8
BASP16
BHIS49

site_idBC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 256
ChainResidue
AGLU174
BALA178
BTHR241
BARG244

site_idBC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 257
ChainResidue
BPRO113
BALA142
BGLU146
BHOH401

site_idCC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO B 258
ChainResidue
BPRO161
BASP189

Functional Information from PROSITE/UniProt
site_idPS00290
Number of Residues7
DetailsIG_MHC Immunoglobulins and major histocompatibility complex proteins signature. FGCWAAH
ChainResidueDetails
APHE206-HIS212

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PDB entries from 2024-07-24

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