3KDO

Crystal structure of Type III Rubisco SP6 mutant complexed with 2-CABP

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000287	molecular_function	magnesium ion binding
A	0006196	biological_process	AMP catabolic process
A	0015977	biological_process	carbon fixation
A	0016491	molecular_function	oxidoreductase activity
A	0016829	molecular_function	lyase activity
A	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
A	0046872	molecular_function	metal ion binding
B	0000287	molecular_function	magnesium ion binding
B	0006196	biological_process	AMP catabolic process
B	0015977	biological_process	carbon fixation
B	0016491	molecular_function	oxidoreductase activity
B	0016829	molecular_function	lyase activity
B	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
B	0046872	molecular_function	metal ion binding
C	0000287	molecular_function	magnesium ion binding
C	0006196	biological_process	AMP catabolic process
C	0015977	biological_process	carbon fixation
C	0016491	molecular_function	oxidoreductase activity
C	0016829	molecular_function	lyase activity
C	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
C	0046872	molecular_function	metal ion binding
D	0000287	molecular_function	magnesium ion binding
D	0006196	biological_process	AMP catabolic process
D	0015977	biological_process	carbon fixation
D	0016491	molecular_function	oxidoreductase activity
D	0016829	molecular_function	lyase activity
D	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
D	0046872	molecular_function	metal ion binding
E	0000287	molecular_function	magnesium ion binding
E	0006196	biological_process	AMP catabolic process
E	0015977	biological_process	carbon fixation
E	0016491	molecular_function	oxidoreductase activity
E	0016829	molecular_function	lyase activity
E	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
E	0046872	molecular_function	metal ion binding
F	0000287	molecular_function	magnesium ion binding
F	0006196	biological_process	AMP catabolic process
F	0015977	biological_process	carbon fixation
F	0016491	molecular_function	oxidoreductase activity
F	0016829	molecular_function	lyase activity
F	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
F	0046872	molecular_function	metal ion binding
G	0000287	molecular_function	magnesium ion binding
G	0006196	biological_process	AMP catabolic process
G	0015977	biological_process	carbon fixation
G	0016491	molecular_function	oxidoreductase activity
G	0016829	molecular_function	lyase activity
G	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
G	0046872	molecular_function	metal ion binding
H	0000287	molecular_function	magnesium ion binding
H	0006196	biological_process	AMP catabolic process
H	0015977	biological_process	carbon fixation
H	0016491	molecular_function	oxidoreductase activity
H	0016829	molecular_function	lyase activity
H	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
H	0046872	molecular_function	metal ion binding
I	0000287	molecular_function	magnesium ion binding
I	0006196	biological_process	AMP catabolic process
I	0015977	biological_process	carbon fixation
I	0016491	molecular_function	oxidoreductase activity
I	0016829	molecular_function	lyase activity
I	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
I	0046872	molecular_function	metal ion binding
J	0000287	molecular_function	magnesium ion binding
J	0006196	biological_process	AMP catabolic process
J	0015977	biological_process	carbon fixation
J	0016491	molecular_function	oxidoreductase activity
J	0016829	molecular_function	lyase activity
J	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
J	0046872	molecular_function	metal ion binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	23
Details	BINDING SITE FOR RESIDUE CAP A 600

Chain	Residue
A	LYS163
A	LEU323
A	SER367
A	GLY368
A	GLY369
A	GLN389
A	GLY391
A	GLY392
A	MG500
A	HOH753
A	HOH1643
A	LYS165
H	THR54
H	TRP55
H	ASN111
H	HOH1724
A	KCX189
A	ASP191
A	GLU192
A	HIS281
A	ARG282
A	HIS314
A	LYS322

---

site_id	AC2
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG A 500

Chain	Residue
A	LYS165
A	KCX189
A	ASP191
A	GLU192
A	CAP600
H	ASN111

---

site_id	AC3
Number of Residues	27
Details	BINDING SITE FOR RESIDUE CAP B 600

Chain	Residue
B	LYS163
B	LYS165
B	KCX189
B	ASP191
B	GLU192
B	HIS281
B	ARG282
B	HIS314
B	LYS322
B	LEU323
B	SER367
B	GLY368
B	GLY369
B	GLN389
B	GLY391
B	GLY392
B	HOH445
B	HOH482
B	MG500
B	HOH619
B	HOH1206
B	HOH1246
B	HOH1922
G	TRP55
G	ASN111
G	HOH474
G	HOH1621

---

site_id	AC4
Number of Residues	5
Details	BINDING SITE FOR RESIDUE MG B 500

Chain	Residue
B	LYS163
B	KCX189
B	ASP191
B	GLU192
B	CAP600

---

site_id	AC5
Number of Residues	27
Details	BINDING SITE FOR RESIDUE CAP C 600

Chain	Residue
C	LYS163
C	LYS165
C	KCX189
C	ASP191
C	GLU192
C	HIS281
C	ARG282
C	HIS314
C	LYS322
C	LEU323
C	SER367
C	GLY368
C	GLY369
C	GLN389
C	GLY391
C	GLY392
C	HOH481
C	HOH489
C	HOH497
C	MG500
C	HOH1211
C	HOH1336
C	HOH1660
F	GLU49
F	TRP55
F	ASN111
F	HOH452

---

site_id	AC6
Number of Residues	4
Details	BINDING SITE FOR RESIDUE MG C 500

Chain	Residue
C	KCX189
C	ASP191
C	GLU192
C	CAP600

---

site_id	AC7
Number of Residues	28
Details	BINDING SITE FOR RESIDUE CAP D 600

Chain	Residue
D	HIS314
D	LYS322
D	LEU323
D	SER367
D	GLY368
D	GLY369
D	GLN389
D	GLY391
D	GLY392
D	HOH445
D	HOH465
D	HOH475
D	HOH498
D	MG500
D	HOH509
D	HOH992
D	HOH1580
J	GLU49
J	THR54
J	TRP55
J	ASN111
D	LYS163
D	LYS165
D	KCX189
D	ASP191
D	GLU192
D	HIS281
D	ARG282

---

site_id	AC8
Number of Residues	5
Details	BINDING SITE FOR RESIDUE MG D 500

Chain	Residue
D	LYS165
D	KCX189
D	ASP191
D	GLU192
D	CAP600

---

site_id	AC9
Number of Residues	24
Details	BINDING SITE FOR RESIDUE CAP E 600

Chain	Residue
E	LYS163
E	LYS165
E	KCX189
E	ASP191
E	GLU192
E	HIS281
E	ARG282
E	HIS314
E	LYS322
E	LEU323
E	SER367
E	GLY368
E	GLY369
E	GLN389
E	GLY391
E	GLY392
E	HOH452
E	MG500
E	HOH532
E	HOH956
E	HOH1175
E	HOH1679
I	TRP55
I	ASN111

---

site_id	BC1
Number of Residues	4
Details	BINDING SITE FOR RESIDUE MG E 500

Chain	Residue
E	KCX189
E	ASP191
E	GLU192
E	CAP600

---

site_id	BC2
Number of Residues	28
Details	BINDING SITE FOR RESIDUE CAP F 600

Chain	Residue
C	GLU49
C	THR54
C	TRP55
C	ASN111
C	HOH488
C	HOH1632
F	LYS163
F	LYS165
F	KCX189
F	ASP191
F	GLU192
F	HIS281
F	ARG282
F	HIS314
F	LYS322
F	LEU323
F	SER367
F	GLY368
F	GLY369
F	GLN389
F	GLY391
F	GLY392
F	HOH447
F	HOH460
F	HOH485
F	MG500
F	HOH1635
F	HOH1780

---

site_id	BC3
Number of Residues	5
Details	BINDING SITE FOR RESIDUE MG F 500

Chain	Residue
F	LYS165
F	KCX189
F	ASP191
F	GLU192
F	CAP600

---

site_id	BC4
Number of Residues	28
Details	BINDING SITE FOR RESIDUE CAP G 600

Chain	Residue
B	GLU49
B	TRP55
B	ASN111
B	HOH452
B	HOH453
G	LYS163
G	LYS165
G	KCX189
G	ASP191
G	GLU192
G	HIS281
G	ARG282
G	HIS314
G	LYS322
G	LEU323
G	SER367
G	GLY368
G	GLY369
G	GLN389
G	GLY391
G	GLY392
G	HOH445
G	HOH447
G	HOH454
G	HOH463
G	HOH478
G	MG500
G	HOH1075

---

site_id	BC5
Number of Residues	4
Details	BINDING SITE FOR RESIDUE MG G 500

Chain	Residue
G	KCX189
G	ASP191
G	GLU192
G	CAP600

---

site_id	BC6
Number of Residues	21
Details	BINDING SITE FOR RESIDUE CAP H 600

Chain	Residue
A	TRP55
A	ASN111
A	HOH1819
H	LYS163
H	LYS165
H	KCX189
H	ASP191
H	GLU192
H	HIS281
H	ARG282
H	HIS314
H	LEU323
H	SER367
H	GLY368
H	GLY369
H	GLN389
H	GLY391
H	GLY392
H	MG500
H	HOH1277
H	HOH1918

---

site_id	BC7
Number of Residues	4
Details	BINDING SITE FOR RESIDUE MG H 500

Chain	Residue
H	KCX189
H	ASP191
H	GLU192
H	CAP600

---

site_id	BC8
Number of Residues	28
Details	BINDING SITE FOR RESIDUE CAP I 600

Chain	Residue
E	GLU49
E	THR54
E	TRP55
E	ASN111
E	HOH994
I	LYS163
I	LYS165
I	KCX189
I	ASP191
I	GLU192
I	HIS281
I	ARG282
I	HIS314
I	LYS322
I	LEU323
I	SER367
I	GLY368
I	GLY369
I	GLN389
I	GLY391
I	GLY392
I	HOH445
I	HOH450
I	HOH455
I	MG500
I	HOH540
I	HOH995
I	HOH1432

---

site_id	BC9
Number of Residues	5
Details	BINDING SITE FOR RESIDUE MG I 500

Chain	Residue
E	ASN111
I	KCX189
I	ASP191
I	GLU192
I	CAP600

---

site_id	CC1
Number of Residues	26
Details	BINDING SITE FOR RESIDUE CAP J 600

Chain	Residue
D	GLU49
D	TRP55
D	ASN111
D	HOH1771
J	LYS163
J	LYS165
J	KCX189
J	ASP191
J	GLU192
J	HIS281
J	ARG282
J	HIS314
J	LYS322
J	LEU323
J	SER367
J	GLY368
J	GLY369
J	GLN389
J	GLY391
J	GLY392
J	HOH475
J	HOH499
J	MG500
J	HOH1614
J	HOH1792
J	HOH1936

---

site_id	CC2
Number of Residues	4
Details	BINDING SITE FOR RESIDUE MG J 500

Chain	Residue
J	KCX189
J	ASP191
J	GLU192
J	CAP600

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	20
Details	Active site: {"description":"Proton acceptor","evidences":[{"source":"HAMAP-Rule","id":"MF_01133","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	80
Details	Binding site: {"evidences":[{"evidenceCode":"ECO:0000305"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	10
Details	Binding site: {"description":"via carbamate group","evidences":[{"source":"HAMAP-Rule","id":"MF_01133","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"20926376","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	20
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01133","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"20926376","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	10
Details	Site: {"description":"Transition state stabilizer","evidences":[{"source":"HAMAP-Rule","id":"MF_01133","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI6
Number of Residues	10
Details	Modified residue: {"description":"N6-carboxylysine","evidences":[{"source":"HAMAP-Rule","id":"MF_01133","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"20926376","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---