3KDO
Crystal structure of Type III Rubisco SP6 mutant complexed with 2-CABP
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000287 | molecular_function | magnesium ion binding |
| A | 0006196 | biological_process | AMP catabolic process |
| A | 0015977 | biological_process | carbon fixation |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0016829 | molecular_function | lyase activity |
| A | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0000287 | molecular_function | magnesium ion binding |
| B | 0006196 | biological_process | AMP catabolic process |
| B | 0015977 | biological_process | carbon fixation |
| B | 0016491 | molecular_function | oxidoreductase activity |
| B | 0016829 | molecular_function | lyase activity |
| B | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| B | 0046872 | molecular_function | metal ion binding |
| C | 0000287 | molecular_function | magnesium ion binding |
| C | 0006196 | biological_process | AMP catabolic process |
| C | 0015977 | biological_process | carbon fixation |
| C | 0016491 | molecular_function | oxidoreductase activity |
| C | 0016829 | molecular_function | lyase activity |
| C | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| C | 0046872 | molecular_function | metal ion binding |
| D | 0000287 | molecular_function | magnesium ion binding |
| D | 0006196 | biological_process | AMP catabolic process |
| D | 0015977 | biological_process | carbon fixation |
| D | 0016491 | molecular_function | oxidoreductase activity |
| D | 0016829 | molecular_function | lyase activity |
| D | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| D | 0046872 | molecular_function | metal ion binding |
| E | 0000287 | molecular_function | magnesium ion binding |
| E | 0006196 | biological_process | AMP catabolic process |
| E | 0015977 | biological_process | carbon fixation |
| E | 0016491 | molecular_function | oxidoreductase activity |
| E | 0016829 | molecular_function | lyase activity |
| E | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| E | 0046872 | molecular_function | metal ion binding |
| F | 0000287 | molecular_function | magnesium ion binding |
| F | 0006196 | biological_process | AMP catabolic process |
| F | 0015977 | biological_process | carbon fixation |
| F | 0016491 | molecular_function | oxidoreductase activity |
| F | 0016829 | molecular_function | lyase activity |
| F | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| F | 0046872 | molecular_function | metal ion binding |
| G | 0000287 | molecular_function | magnesium ion binding |
| G | 0006196 | biological_process | AMP catabolic process |
| G | 0015977 | biological_process | carbon fixation |
| G | 0016491 | molecular_function | oxidoreductase activity |
| G | 0016829 | molecular_function | lyase activity |
| G | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| G | 0046872 | molecular_function | metal ion binding |
| H | 0000287 | molecular_function | magnesium ion binding |
| H | 0006196 | biological_process | AMP catabolic process |
| H | 0015977 | biological_process | carbon fixation |
| H | 0016491 | molecular_function | oxidoreductase activity |
| H | 0016829 | molecular_function | lyase activity |
| H | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| H | 0046872 | molecular_function | metal ion binding |
| I | 0000287 | molecular_function | magnesium ion binding |
| I | 0006196 | biological_process | AMP catabolic process |
| I | 0015977 | biological_process | carbon fixation |
| I | 0016491 | molecular_function | oxidoreductase activity |
| I | 0016829 | molecular_function | lyase activity |
| I | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| I | 0046872 | molecular_function | metal ion binding |
| J | 0000287 | molecular_function | magnesium ion binding |
| J | 0006196 | biological_process | AMP catabolic process |
| J | 0015977 | biological_process | carbon fixation |
| J | 0016491 | molecular_function | oxidoreductase activity |
| J | 0016829 | molecular_function | lyase activity |
| J | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| J | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 23 |
| Details | BINDING SITE FOR RESIDUE CAP A 600 |
| Chain | Residue |
| A | LYS163 |
| A | LEU323 |
| A | SER367 |
| A | GLY368 |
| A | GLY369 |
| A | GLN389 |
| A | GLY391 |
| A | GLY392 |
| A | MG500 |
| A | HOH753 |
| A | HOH1643 |
| A | LYS165 |
| H | THR54 |
| H | TRP55 |
| H | ASN111 |
| H | HOH1724 |
| A | KCX189 |
| A | ASP191 |
| A | GLU192 |
| A | HIS281 |
| A | ARG282 |
| A | HIS314 |
| A | LYS322 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG A 500 |
| Chain | Residue |
| A | LYS165 |
| A | KCX189 |
| A | ASP191 |
| A | GLU192 |
| A | CAP600 |
| H | ASN111 |
| site_id | AC3 |
| Number of Residues | 27 |
| Details | BINDING SITE FOR RESIDUE CAP B 600 |
| Chain | Residue |
| B | LYS163 |
| B | LYS165 |
| B | KCX189 |
| B | ASP191 |
| B | GLU192 |
| B | HIS281 |
| B | ARG282 |
| B | HIS314 |
| B | LYS322 |
| B | LEU323 |
| B | SER367 |
| B | GLY368 |
| B | GLY369 |
| B | GLN389 |
| B | GLY391 |
| B | GLY392 |
| B | HOH445 |
| B | HOH482 |
| B | MG500 |
| B | HOH619 |
| B | HOH1206 |
| B | HOH1246 |
| B | HOH1922 |
| G | TRP55 |
| G | ASN111 |
| G | HOH474 |
| G | HOH1621 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MG B 500 |
| Chain | Residue |
| B | LYS163 |
| B | KCX189 |
| B | ASP191 |
| B | GLU192 |
| B | CAP600 |
| site_id | AC5 |
| Number of Residues | 27 |
| Details | BINDING SITE FOR RESIDUE CAP C 600 |
| Chain | Residue |
| C | LYS163 |
| C | LYS165 |
| C | KCX189 |
| C | ASP191 |
| C | GLU192 |
| C | HIS281 |
| C | ARG282 |
| C | HIS314 |
| C | LYS322 |
| C | LEU323 |
| C | SER367 |
| C | GLY368 |
| C | GLY369 |
| C | GLN389 |
| C | GLY391 |
| C | GLY392 |
| C | HOH481 |
| C | HOH489 |
| C | HOH497 |
| C | MG500 |
| C | HOH1211 |
| C | HOH1336 |
| C | HOH1660 |
| F | GLU49 |
| F | TRP55 |
| F | ASN111 |
| F | HOH452 |
| site_id | AC6 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE MG C 500 |
| Chain | Residue |
| C | KCX189 |
| C | ASP191 |
| C | GLU192 |
| C | CAP600 |
| site_id | AC7 |
| Number of Residues | 28 |
| Details | BINDING SITE FOR RESIDUE CAP D 600 |
| Chain | Residue |
| D | HIS314 |
| D | LYS322 |
| D | LEU323 |
| D | SER367 |
| D | GLY368 |
| D | GLY369 |
| D | GLN389 |
| D | GLY391 |
| D | GLY392 |
| D | HOH445 |
| D | HOH465 |
| D | HOH475 |
| D | HOH498 |
| D | MG500 |
| D | HOH509 |
| D | HOH992 |
| D | HOH1580 |
| J | GLU49 |
| J | THR54 |
| J | TRP55 |
| J | ASN111 |
| D | LYS163 |
| D | LYS165 |
| D | KCX189 |
| D | ASP191 |
| D | GLU192 |
| D | HIS281 |
| D | ARG282 |
| site_id | AC8 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MG D 500 |
| Chain | Residue |
| D | LYS165 |
| D | KCX189 |
| D | ASP191 |
| D | GLU192 |
| D | CAP600 |
| site_id | AC9 |
| Number of Residues | 24 |
| Details | BINDING SITE FOR RESIDUE CAP E 600 |
| Chain | Residue |
| E | LYS163 |
| E | LYS165 |
| E | KCX189 |
| E | ASP191 |
| E | GLU192 |
| E | HIS281 |
| E | ARG282 |
| E | HIS314 |
| E | LYS322 |
| E | LEU323 |
| E | SER367 |
| E | GLY368 |
| E | GLY369 |
| E | GLN389 |
| E | GLY391 |
| E | GLY392 |
| E | HOH452 |
| E | MG500 |
| E | HOH532 |
| E | HOH956 |
| E | HOH1175 |
| E | HOH1679 |
| I | TRP55 |
| I | ASN111 |
| site_id | BC1 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE MG E 500 |
| Chain | Residue |
| E | KCX189 |
| E | ASP191 |
| E | GLU192 |
| E | CAP600 |
| site_id | BC2 |
| Number of Residues | 28 |
| Details | BINDING SITE FOR RESIDUE CAP F 600 |
| Chain | Residue |
| C | GLU49 |
| C | THR54 |
| C | TRP55 |
| C | ASN111 |
| C | HOH488 |
| C | HOH1632 |
| F | LYS163 |
| F | LYS165 |
| F | KCX189 |
| F | ASP191 |
| F | GLU192 |
| F | HIS281 |
| F | ARG282 |
| F | HIS314 |
| F | LYS322 |
| F | LEU323 |
| F | SER367 |
| F | GLY368 |
| F | GLY369 |
| F | GLN389 |
| F | GLY391 |
| F | GLY392 |
| F | HOH447 |
| F | HOH460 |
| F | HOH485 |
| F | MG500 |
| F | HOH1635 |
| F | HOH1780 |
| site_id | BC3 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MG F 500 |
| Chain | Residue |
| F | LYS165 |
| F | KCX189 |
| F | ASP191 |
| F | GLU192 |
| F | CAP600 |
| site_id | BC4 |
| Number of Residues | 28 |
| Details | BINDING SITE FOR RESIDUE CAP G 600 |
| Chain | Residue |
| B | GLU49 |
| B | TRP55 |
| B | ASN111 |
| B | HOH452 |
| B | HOH453 |
| G | LYS163 |
| G | LYS165 |
| G | KCX189 |
| G | ASP191 |
| G | GLU192 |
| G | HIS281 |
| G | ARG282 |
| G | HIS314 |
| G | LYS322 |
| G | LEU323 |
| G | SER367 |
| G | GLY368 |
| G | GLY369 |
| G | GLN389 |
| G | GLY391 |
| G | GLY392 |
| G | HOH445 |
| G | HOH447 |
| G | HOH454 |
| G | HOH463 |
| G | HOH478 |
| G | MG500 |
| G | HOH1075 |
| site_id | BC5 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE MG G 500 |
| Chain | Residue |
| G | KCX189 |
| G | ASP191 |
| G | GLU192 |
| G | CAP600 |
| site_id | BC6 |
| Number of Residues | 21 |
| Details | BINDING SITE FOR RESIDUE CAP H 600 |
| Chain | Residue |
| A | TRP55 |
| A | ASN111 |
| A | HOH1819 |
| H | LYS163 |
| H | LYS165 |
| H | KCX189 |
| H | ASP191 |
| H | GLU192 |
| H | HIS281 |
| H | ARG282 |
| H | HIS314 |
| H | LEU323 |
| H | SER367 |
| H | GLY368 |
| H | GLY369 |
| H | GLN389 |
| H | GLY391 |
| H | GLY392 |
| H | MG500 |
| H | HOH1277 |
| H | HOH1918 |
| site_id | BC7 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE MG H 500 |
| Chain | Residue |
| H | KCX189 |
| H | ASP191 |
| H | GLU192 |
| H | CAP600 |
| site_id | BC8 |
| Number of Residues | 28 |
| Details | BINDING SITE FOR RESIDUE CAP I 600 |
| Chain | Residue |
| E | GLU49 |
| E | THR54 |
| E | TRP55 |
| E | ASN111 |
| E | HOH994 |
| I | LYS163 |
| I | LYS165 |
| I | KCX189 |
| I | ASP191 |
| I | GLU192 |
| I | HIS281 |
| I | ARG282 |
| I | HIS314 |
| I | LYS322 |
| I | LEU323 |
| I | SER367 |
| I | GLY368 |
| I | GLY369 |
| I | GLN389 |
| I | GLY391 |
| I | GLY392 |
| I | HOH445 |
| I | HOH450 |
| I | HOH455 |
| I | MG500 |
| I | HOH540 |
| I | HOH995 |
| I | HOH1432 |
| site_id | BC9 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MG I 500 |
| Chain | Residue |
| E | ASN111 |
| I | KCX189 |
| I | ASP191 |
| I | GLU192 |
| I | CAP600 |
| site_id | CC1 |
| Number of Residues | 26 |
| Details | BINDING SITE FOR RESIDUE CAP J 600 |
| Chain | Residue |
| D | GLU49 |
| D | TRP55 |
| D | ASN111 |
| D | HOH1771 |
| J | LYS163 |
| J | LYS165 |
| J | KCX189 |
| J | ASP191 |
| J | GLU192 |
| J | HIS281 |
| J | ARG282 |
| J | HIS314 |
| J | LYS322 |
| J | LEU323 |
| J | SER367 |
| J | GLY368 |
| J | GLY369 |
| J | GLN389 |
| J | GLY391 |
| J | GLY392 |
| J | HOH475 |
| J | HOH499 |
| J | MG500 |
| J | HOH1614 |
| J | HOH1792 |
| J | HOH1936 |
| site_id | CC2 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE MG J 500 |
| Chain | Residue |
| J | KCX189 |
| J | ASP191 |
| J | GLU192 |
| J | CAP600 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 20 |
| Details | ACT_SITE: Proton acceptor => ECO:0000255|HAMAP-Rule:MF_01133 |
| Chain | Residue | Details |
| A | LYS163 | |
| E | HIS281 | |
| F | LYS163 | |
| F | HIS281 | |
| G | LYS163 | |
| G | HIS281 | |
| H | LYS163 | |
| H | HIS281 | |
| I | LYS163 | |
| I | HIS281 | |
| J | LYS163 | |
| A | HIS281 | |
| J | HIS281 | |
| B | LYS163 | |
| B | HIS281 | |
| C | LYS163 | |
| C | HIS281 | |
| D | LYS163 | |
| D | HIS281 | |
| E | LYS163 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 50 |
| Details | BINDING: BINDING => ECO:0000305 |
| Chain | Residue | Details |
| A | LYS165 | |
| B | GLN389 | |
| C | LYS165 | |
| C | ARG282 | |
| C | HIS314 | |
| C | SER367 | |
| C | GLN389 | |
| D | LYS165 | |
| D | ARG282 | |
| D | HIS314 | |
| D | SER367 | |
| A | ARG282 | |
| D | GLN389 | |
| E | LYS165 | |
| E | ARG282 | |
| E | HIS314 | |
| E | SER367 | |
| E | GLN389 | |
| F | LYS165 | |
| F | ARG282 | |
| F | HIS314 | |
| F | SER367 | |
| A | HIS314 | |
| F | GLN389 | |
| G | LYS165 | |
| G | ARG282 | |
| G | HIS314 | |
| G | SER367 | |
| G | GLN389 | |
| H | LYS165 | |
| H | ARG282 | |
| H | HIS314 | |
| H | SER367 | |
| A | SER367 | |
| H | GLN389 | |
| I | LYS165 | |
| I | ARG282 | |
| I | HIS314 | |
| I | SER367 | |
| I | GLN389 | |
| J | LYS165 | |
| J | ARG282 | |
| J | HIS314 | |
| J | SER367 | |
| A | GLN389 | |
| J | GLN389 | |
| B | LYS165 | |
| B | ARG282 | |
| B | HIS314 | |
| B | SER367 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 10 |
| Details | BINDING: via carbamate group => ECO:0000255|HAMAP-Rule:MF_01133, ECO:0000269|PubMed:20926376 |
| Chain | Residue | Details |
| A | KCX189 | |
| J | KCX189 | |
| B | KCX189 | |
| C | KCX189 | |
| D | KCX189 | |
| E | KCX189 | |
| F | KCX189 | |
| G | KCX189 | |
| H | KCX189 | |
| I | KCX189 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 20 |
| Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01133, ECO:0000269|PubMed:20926376 |
| Chain | Residue | Details |
| A | ASP191 | |
| E | GLU192 | |
| F | ASP191 | |
| F | GLU192 | |
| G | ASP191 | |
| G | GLU192 | |
| H | ASP191 | |
| H | GLU192 | |
| I | ASP191 | |
| I | GLU192 | |
| J | ASP191 | |
| A | GLU192 | |
| J | GLU192 | |
| B | ASP191 | |
| B | GLU192 | |
| C | ASP191 | |
| C | GLU192 | |
| D | ASP191 | |
| D | GLU192 | |
| E | ASP191 |
| site_id | SWS_FT_FI5 |
| Number of Residues | 10 |
| Details | SITE: Transition state stabilizer => ECO:0000255|HAMAP-Rule:MF_01133 |
| Chain | Residue | Details |
| A | LYS322 | |
| J | LYS322 | |
| B | LYS322 | |
| C | LYS322 | |
| D | LYS322 | |
| E | LYS322 | |
| F | LYS322 | |
| G | LYS322 | |
| H | LYS322 | |
| I | LYS322 |
| site_id | SWS_FT_FI6 |
| Number of Residues | 10 |
| Details | MOD_RES: N6-carboxylysine => ECO:0000255|HAMAP-Rule:MF_01133, ECO:0000269|PubMed:20926376 |
| Chain | Residue | Details |
| A | KCX189 | |
| J | KCX189 | |
| B | KCX189 | |
| C | KCX189 | |
| D | KCX189 | |
| E | KCX189 | |
| F | KCX189 | |
| G | KCX189 | |
| H | KCX189 | |
| I | KCX189 |
