3KB2
Crystal Structure of YorR protein in complex with phosphorylated GDP from Bacillus subtilis, Northeast Structural Genomics Consortium Target SR256
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0004798 | molecular_function | thymidylate kinase activity |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005829 | cellular_component | cytosol |
| A | 0006227 | biological_process | dUDP biosynthetic process |
| A | 0006233 | biological_process | dTDP biosynthetic process |
| A | 0006235 | biological_process | dTTP biosynthetic process |
| A | 0046940 | biological_process | nucleoside monophosphate phosphorylation |
| B | 0004798 | molecular_function | thymidylate kinase activity |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005829 | cellular_component | cytosol |
| B | 0006227 | biological_process | dUDP biosynthetic process |
| B | 0006233 | biological_process | dTDP biosynthetic process |
| B | 0006235 | biological_process | dTTP biosynthetic process |
| B | 0046940 | biological_process | nucleoside monophosphate phosphorylation |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 13 |
| Details | BINDING SITE FOR RESIDUE G3D A 180 |
| Chain | Residue |
| A | CYS11 |
| A | HOH227 |
| A | HOH234 |
| A | HOH268 |
| A | HOH269 |
| A | CYS12 |
| A | PHE13 |
| A | LYS14 |
| A | SER15 |
| A | THR16 |
| A | SER152 |
| A | SER153 |
| A | MG181 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG A 181 |
| Chain | Residue |
| A | SER15 |
| A | G3D180 |
| A | HOH268 |
| A | HOH269 |
| A | HOH270 |
| B | HOH231 |
| site_id | AC3 |
| Number of Residues | 15 |
| Details | BINDING SITE FOR RESIDUE G3D B 180 |
| Chain | Residue |
| B | ASP10 |
| B | CYS11 |
| B | CYS12 |
| B | PHE13 |
| B | LYS14 |
| B | SER15 |
| B | THR16 |
| B | SER152 |
| B | SER153 |
| B | HOH175 |
| B | HOH176 |
| B | MG181 |
| B | HOH217 |
| B | HOH230 |
| B | HOH235 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MG B 181 |
| Chain | Residue |
| B | SER15 |
| B | ASP61 |
| B | HOH175 |
| B | HOH176 |
| B | G3D180 |
Functional Information from PROSITE/UniProt
| site_id | PS01331 |
| Number of Residues | 13 |
| Details | THYMIDYLATE_KINASE Thymidylate kinase signature. IIDRFvySNlVYA |
| Chain | Residue | Details |
| A | ILE59-ALA71 |
