3JVA
Crystal structure of Dipeptide Epimerase from Enterococcus faecalis V583
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000287 | molecular_function | magnesium ion binding |
| A | 0006518 | biological_process | peptide metabolic process |
| A | 0009063 | biological_process | amino acid catabolic process |
| A | 0016853 | molecular_function | isomerase activity |
| A | 0016854 | molecular_function | racemase and epimerase activity |
| A | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0000287 | molecular_function | magnesium ion binding |
| B | 0006518 | biological_process | peptide metabolic process |
| B | 0009063 | biological_process | amino acid catabolic process |
| B | 0016853 | molecular_function | isomerase activity |
| B | 0016854 | molecular_function | racemase and epimerase activity |
| B | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
| B | 0046872 | molecular_function | metal ion binding |
| C | 0000287 | molecular_function | magnesium ion binding |
| C | 0006518 | biological_process | peptide metabolic process |
| C | 0009063 | biological_process | amino acid catabolic process |
| C | 0016853 | molecular_function | isomerase activity |
| C | 0016854 | molecular_function | racemase and epimerase activity |
| C | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
| C | 0046872 | molecular_function | metal ion binding |
| D | 0000287 | molecular_function | magnesium ion binding |
| D | 0006518 | biological_process | peptide metabolic process |
| D | 0009063 | biological_process | amino acid catabolic process |
| D | 0016853 | molecular_function | isomerase activity |
| D | 0016854 | molecular_function | racemase and epimerase activity |
| D | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
| D | 0046872 | molecular_function | metal ion binding |
| E | 0000287 | molecular_function | magnesium ion binding |
| E | 0006518 | biological_process | peptide metabolic process |
| E | 0009063 | biological_process | amino acid catabolic process |
| E | 0016853 | molecular_function | isomerase activity |
| E | 0016854 | molecular_function | racemase and epimerase activity |
| E | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
| E | 0046872 | molecular_function | metal ion binding |
| F | 0000287 | molecular_function | magnesium ion binding |
| F | 0006518 | biological_process | peptide metabolic process |
| F | 0009063 | biological_process | amino acid catabolic process |
| F | 0016853 | molecular_function | isomerase activity |
| F | 0016854 | molecular_function | racemase and epimerase activity |
| F | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
| F | 0046872 | molecular_function | metal ion binding |
| G | 0000287 | molecular_function | magnesium ion binding |
| G | 0006518 | biological_process | peptide metabolic process |
| G | 0009063 | biological_process | amino acid catabolic process |
| G | 0016853 | molecular_function | isomerase activity |
| G | 0016854 | molecular_function | racemase and epimerase activity |
| G | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
| G | 0046872 | molecular_function | metal ion binding |
| H | 0000287 | molecular_function | magnesium ion binding |
| H | 0006518 | biological_process | peptide metabolic process |
| H | 0009063 | biological_process | amino acid catabolic process |
| H | 0016853 | molecular_function | isomerase activity |
| H | 0016854 | molecular_function | racemase and epimerase activity |
| H | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
| H | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 13 |
| Details | BINDING SITE FOR RESIDUE GOL A 355 |
| Chain | Residue |
| A | GLU57 |
| E | GLU57 |
| E | THR58 |
| E | GLY61 |
| E | THR62 |
| A | THR58 |
| A | GLY61 |
| A | THR62 |
| A | HOH401 |
| A | HOH546 |
| A | HOH625 |
| A | HOH704 |
| A | HOH831 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG A 356 |
| Chain | Residue |
| A | ASP189 |
| A | GLU215 |
| A | ASP240 |
| A | SO4357 |
| A | HOH358 |
| A | HOH359 |
| site_id | AC3 |
| Number of Residues | 12 |
| Details | BINDING SITE FOR RESIDUE SO4 A 357 |
| Chain | Residue |
| A | LYS159 |
| A | LYS161 |
| A | ASP189 |
| A | GLU215 |
| A | ASP240 |
| A | LYS264 |
| A | CYS292 |
| A | ASP318 |
| A | MG356 |
| A | HOH358 |
| A | HOH386 |
| A | HOH399 |
| site_id | AC4 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE GOL B 355 |
| Chain | Residue |
| B | ILE166 |
| B | TRP194 |
| B | ASP198 |
| B | LYS201 |
| site_id | AC5 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL B 356 |
| Chain | Residue |
| A | MET1 |
| A | ASN77 |
| A | LYS113 |
| B | LEU116 |
| B | PRO117 |
| B | GLN120 |
| B | GLU346 |
| site_id | AC6 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL B 357 |
| Chain | Residue |
| B | ILE54 |
| B | LYS159 |
| B | LYS264 |
| B | CYS292 |
| B | HOH359 |
| B | HOH557 |
| B | HOH863 |
| site_id | AC7 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG B 358 |
| Chain | Residue |
| B | ASP189 |
| B | GLU215 |
| B | ASP240 |
| B | HOH359 |
| B | HOH360 |
| B | HOH362 |
| site_id | AC8 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE MG C 355 |
| Chain | Residue |
| C | ASP189 |
| C | GLU215 |
| C | ASP240 |
| C | SO4357 |
| C | HOH358 |
| C | HOH359 |
| C | HOH875 |
| site_id | AC9 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 C 356 |
| Chain | Residue |
| C | GLY56 |
| C | THR58 |
| C | GLY61 |
| G | THR58 |
| G | GLY61 |
| G | HOH836 |
| site_id | BC1 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE SO4 C 357 |
| Chain | Residue |
| C | LYS159 |
| C | LYS161 |
| C | LYS264 |
| C | CYS292 |
| C | MG355 |
| C | HOH358 |
| C | HOH762 |
| C | HOH875 |
| C | HOH877 |
| C | HOH879 |
| site_id | BC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG D 355 |
| Chain | Residue |
| D | ASP189 |
| D | GLU215 |
| D | ASP240 |
| D | HOH356 |
| D | HOH357 |
| D | HOH358 |
| site_id | BC3 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG E 355 |
| Chain | Residue |
| E | ASP189 |
| E | GLU215 |
| E | ASP240 |
| E | SO4356 |
| E | HOH357 |
| E | HOH358 |
| site_id | BC4 |
| Number of Residues | 12 |
| Details | BINDING SITE FOR RESIDUE SO4 E 356 |
| Chain | Residue |
| E | HOH357 |
| E | HOH399 |
| E | HOH400 |
| E | LYS159 |
| E | LYS161 |
| E | ASP189 |
| E | GLU215 |
| E | ASP240 |
| E | LYS264 |
| E | CYS292 |
| E | ASP318 |
| E | MG355 |
| site_id | BC5 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL F 355 |
| Chain | Residue |
| F | ILE54 |
| F | LYS159 |
| F | LYS264 |
| F | CYS292 |
| F | HOH360 |
| F | HOH428 |
| F | HOH775 |
| site_id | BC6 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG F 356 |
| Chain | Residue |
| F | ASP189 |
| F | GLU215 |
| F | ASP240 |
| F | HOH357 |
| F | HOH358 |
| F | HOH360 |
| site_id | BC7 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG G 355 |
| Chain | Residue |
| G | ASP189 |
| G | GLU215 |
| G | ASP240 |
| G | HOH357 |
| G | HOH358 |
| G | HOH359 |
| site_id | BC8 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE SO4 G 356 |
| Chain | Residue |
| G | LYS159 |
| G | LYS161 |
| G | ASP189 |
| G | LYS264 |
| G | CYS292 |
| G | HOH357 |
| G | HOH359 |
| G | HOH603 |
| site_id | BC9 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG H 355 |
| Chain | Residue |
| H | ASP189 |
| H | GLU215 |
| H | ASP240 |
| H | HOH356 |
| H | HOH359 |
| H | HOH360 |
Functional Information from PROSITE/UniProt
| site_id | PS00909 |
| Number of Residues | 32 |
| Details | MR_MLE_2 Mandelate racemase / muconate lactonizing enzyme family signature 2. LrlDaNqawtpkdAvkaiqaLadyqielVEQP |
| Chain | Residue | Details |
| A | LEU186-PRO217 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 112 |
| Details | Binding site: {} |
| Chain | Residue | Details |
