Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3JCT

Cryo-em structure of eukaryotic pre-60S ribosomal subunits

This is a non-PDB format compatible entry.
Functional Information from GO Data
ChainGOidnamespacecontents
40000055biological_processribosomal large subunit export from nucleus
40003674molecular_functionmolecular_function
40005515molecular_functionprotein binding
40005634cellular_componentnucleus
40005654cellular_componentnucleoplasm
40005730cellular_componentnucleolus
40005737cellular_componentcytoplasm
40006508biological_processproteolysis
40008237molecular_functionmetallopeptidase activity
40030687cellular_componentpreribosome, large subunit precursor
40046872molecular_functionmetal ion binding
50003674molecular_functionmolecular_function
50005515molecular_functionprotein binding
50005634cellular_componentnucleus
50005730cellular_componentnucleolus
50006364biological_processrRNA processing
50030687cellular_componentpreribosome, large subunit precursor
50042254biological_processribosome biogenesis
A0002181biological_processcytoplasmic translation
A0003723molecular_functionRNA binding
A0003735molecular_functionstructural constituent of ribosome
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0005840cellular_componentribosome
A0006412biological_processtranslation
A0019843molecular_functionrRNA binding
A0022625cellular_componentcytosolic large ribosomal subunit
A0022626cellular_componentcytosolic ribosome
A0042273biological_processribosomal large subunit biogenesis
A1990145biological_processmaintenance of translational fidelity
A1990904cellular_componentribonucleoprotein complex
B0000027biological_processribosomal large subunit assembly
B0002181biological_processcytoplasmic translation
B0003723molecular_functionRNA binding
B0003735molecular_functionstructural constituent of ribosome
B0005515molecular_functionprotein binding
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0005840cellular_componentribosome
B0006364biological_processrRNA processing
B0006412biological_processtranslation
B0006414biological_processtranslational elongation
B0022625cellular_componentcytosolic large ribosomal subunit
B1990145biological_processmaintenance of translational fidelity
B1990904cellular_componentribonucleoprotein complex
C0002181biological_processcytoplasmic translation
C0003723molecular_functionRNA binding
C0003735molecular_functionstructural constituent of ribosome
C0005634cellular_componentnucleus
C0005737cellular_componentcytoplasm
C0005829cellular_componentcytosol
C0005840cellular_componentribosome
C0006412biological_processtranslation
C0022625cellular_componentcytosolic large ribosomal subunit
C1990904cellular_componentribonucleoprotein complex
D0000027biological_processribosomal large subunit assembly
D0002181biological_processcytoplasmic translation
D0003735molecular_functionstructural constituent of ribosome
D0005515molecular_functionprotein binding
D0005634cellular_componentnucleus
D0005737cellular_componentcytoplasm
D0005829cellular_componentcytosol
D0005840cellular_componentribosome
D0006412biological_processtranslation
D0008097molecular_function5S rRNA binding
D0019843molecular_functionrRNA binding
D0022625cellular_componentcytosolic large ribosomal subunit
D1990904cellular_componentribonucleoprotein complex
E0000027biological_processribosomal large subunit assembly
E0002181biological_processcytoplasmic translation
E0003723molecular_functionRNA binding
E0003735molecular_functionstructural constituent of ribosome
E0005737cellular_componentcytoplasm
E0005829cellular_componentcytosol
E0005840cellular_componentribosome
E0006412biological_processtranslation
E0022625cellular_componentcytosolic large ribosomal subunit
E1990904cellular_componentribonucleoprotein complex
F0000463biological_processmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
F0000470biological_processmaturation of LSU-rRNA
F0002181biological_processcytoplasmic translation
F0003723molecular_functionRNA binding
F0003735molecular_functionstructural constituent of ribosome
F0005737cellular_componentcytoplasm
F0005829cellular_componentcytosol
F0005840cellular_componentribosome
F0022625cellular_componentcytosolic large ribosomal subunit
F0042273biological_processribosomal large subunit biogenesis
F1990904cellular_componentribonucleoprotein complex
G0000470biological_processmaturation of LSU-rRNA
G0002181biological_processcytoplasmic translation
G0003723molecular_functionRNA binding
G0003735molecular_functionstructural constituent of ribosome
G0005737cellular_componentcytoplasm
G0005829cellular_componentcytosol
G0005840cellular_componentribosome
G0006364biological_processrRNA processing
G0022625cellular_componentcytosolic large ribosomal subunit
G0042254biological_processribosome biogenesis
G1990904cellular_componentribonucleoprotein complex
H0002181biological_processcytoplasmic translation
H0003735molecular_functionstructural constituent of ribosome
H0005737cellular_componentcytoplasm
H0005829cellular_componentcytosol
H0005840cellular_componentribosome
H0006412biological_processtranslation
H0019843molecular_functionrRNA binding
H0022625cellular_componentcytosolic large ribosomal subunit
H1990904cellular_componentribonucleoprotein complex
I0000055biological_processribosomal large subunit export from nucleus
I0003676molecular_functionnucleic acid binding
I0005634cellular_componentnucleus
I0005737cellular_componentcytoplasm
I0008270molecular_functionzinc ion binding
I0030687cellular_componentpreribosome, large subunit precursor
I0042254biological_processribosome biogenesis
I0043023molecular_functionribosomal large subunit binding
I0046872molecular_functionmetal ion binding
J0000027biological_processribosomal large subunit assembly
J0002181biological_processcytoplasmic translation
J0003723molecular_functionRNA binding
J0003735molecular_functionstructural constituent of ribosome
J0005634cellular_componentnucleus
J0005737cellular_componentcytoplasm
J0005829cellular_componentcytosol
J0005840cellular_componentribosome
J0006412biological_processtranslation
J0019843molecular_functionrRNA binding
J0022625cellular_componentcytosolic large ribosomal subunit
J1990904cellular_componentribonucleoprotein complex
K0000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
K0000463biological_processmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
K0000466biological_processmaturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
K0000502cellular_componentproteasome complex
K0003723molecular_functionRNA binding
K0005515molecular_functionprotein binding
K0005634cellular_componentnucleus
K0005730cellular_componentnucleolus
K0019843molecular_functionrRNA binding
K0030163biological_processprotein catabolic process
K0030674molecular_functionprotein-macromolecule adaptor activity
K0030687cellular_componentpreribosome, large subunit precursor
K0042254biological_processribosome biogenesis
K0042802molecular_functionidentical protein binding
K0070180molecular_functionlarge ribosomal subunit rRNA binding
K0070628molecular_functionproteasome binding
K1990904cellular_componentribonucleoprotein complex
L0002181biological_processcytoplasmic translation
L0003723molecular_functionRNA binding
L0003735molecular_functionstructural constituent of ribosome
L0005737cellular_componentcytoplasm
L0005829cellular_componentcytosol
L0005840cellular_componentribosome
L0006412biological_processtranslation
L0022625cellular_componentcytosolic large ribosomal subunit
L1990904cellular_componentribonucleoprotein complex
M0000027biological_processribosomal large subunit assembly
M0000470biological_processmaturation of LSU-rRNA
M0002181biological_processcytoplasmic translation
M0003723molecular_functionRNA binding
M0003735molecular_functionstructural constituent of ribosome
M0005730cellular_componentnucleolus
M0005737cellular_componentcytoplasm
M0005829cellular_componentcytosol
M0005840cellular_componentribosome
M0006412biological_processtranslation
M0016236biological_processmacroautophagy
M0022625cellular_componentcytosolic large ribosomal subunit
M0032991cellular_componentprotein-containing complex
M0042273biological_processribosomal large subunit biogenesis
M0043232cellular_componentintracellular non-membrane-bounded organelle
M1990904cellular_componentribonucleoprotein complex
N0002181biological_processcytoplasmic translation
N0003723molecular_functionRNA binding
N0003735molecular_functionstructural constituent of ribosome
N0005737cellular_componentcytoplasm
N0005829cellular_componentcytosol
N0005840cellular_componentribosome
N0006412biological_processtranslation
N0022625cellular_componentcytosolic large ribosomal subunit
N0022626cellular_componentcytosolic ribosome
N1990904cellular_componentribonucleoprotein complex
O0000470biological_processmaturation of LSU-rRNA
O0002181biological_processcytoplasmic translation
O0003723molecular_functionRNA binding
O0003729molecular_functionmRNA binding
O0003735molecular_functionstructural constituent of ribosome
O0005730cellular_componentnucleolus
O0005737cellular_componentcytoplasm
O0005829cellular_componentcytosol
O0005840cellular_componentribosome
O0006412biological_processtranslation
O0015934cellular_componentlarge ribosomal subunit
O0017148biological_processnegative regulation of translation
O0022625cellular_componentcytosolic large ribosomal subunit
O1990904cellular_componentribonucleoprotein complex
P0000448biological_processcleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
P0002181biological_processcytoplasmic translation
P0003735molecular_functionstructural constituent of ribosome
P0005737cellular_componentcytoplasm
P0005829cellular_componentcytosol
P0005840cellular_componentribosome
P0006412biological_processtranslation
P0015934cellular_componentlarge ribosomal subunit
P0022625cellular_componentcytosolic large ribosomal subunit
P0030687cellular_componentpreribosome, large subunit precursor
P1990904cellular_componentribonucleoprotein complex
Q0002181biological_processcytoplasmic translation
Q0003723molecular_functionRNA binding
Q0003735molecular_functionstructural constituent of ribosome
Q0005737cellular_componentcytoplasm
Q0005829cellular_componentcytosol
Q0005840cellular_componentribosome
Q0006412biological_processtranslation
Q0022625cellular_componentcytosolic large ribosomal subunit
Q0043232cellular_componentintracellular non-membrane-bounded organelle
Q1990904cellular_componentribonucleoprotein complex
R0002181biological_processcytoplasmic translation
R0003723molecular_functionRNA binding
R0003735molecular_functionstructural constituent of ribosome
R0005737cellular_componentcytoplasm
R0005829cellular_componentcytosol
R0005840cellular_componentribosome
R0006412biological_processtranslation
R0022625cellular_componentcytosolic large ribosomal subunit
R1990904cellular_componentribonucleoprotein complex
S0002181biological_processcytoplasmic translation
S0003735molecular_functionstructural constituent of ribosome
S0005737cellular_componentcytoplasm
S0005829cellular_componentcytosol
S0005840cellular_componentribosome
S0006412biological_processtranslation
S0022625cellular_componentcytosolic large ribosomal subunit
S1990904cellular_componentribonucleoprotein complex
T0002181biological_processcytoplasmic translation
T0003735molecular_functionstructural constituent of ribosome
T0005737cellular_componentcytoplasm
T0005829cellular_componentcytosol
T0005840cellular_componentribosome
T0006412biological_processtranslation
T0022625cellular_componentcytosolic large ribosomal subunit
T1990904cellular_componentribonucleoprotein complex
U0002181biological_processcytoplasmic translation
U0003723molecular_functionRNA binding
U0003735molecular_functionstructural constituent of ribosome
U0005737cellular_componentcytoplasm
U0005829cellular_componentcytosol
U0005840cellular_componentribosome
U0006412biological_processtranslation
U0022625cellular_componentcytosolic large ribosomal subunit
U1990904cellular_componentribonucleoprotein complex
V0002181biological_processcytoplasmic translation
V0003735molecular_functionstructural constituent of ribosome
V0005737cellular_componentcytoplasm
V0005829cellular_componentcytosol
V0005840cellular_componentribosome
V0006412biological_processtranslation
V0022625cellular_componentcytosolic large ribosomal subunit
V0070180molecular_functionlarge ribosomal subunit rRNA binding
V1990904cellular_componentribonucleoprotein complex
W0000027biological_processribosomal large subunit assembly
W0000055biological_processribosomal large subunit export from nucleus
W0000956biological_processnuclear-transcribed mRNA catabolic process
W0005634cellular_componentnucleus
W0005654cellular_componentnucleoplasm
W0005730cellular_componentnucleolus
W0005737cellular_componentcytoplasm
W0006364biological_processrRNA processing
W0030490biological_processmaturation of SSU-rRNA
W0030687cellular_componentpreribosome, large subunit precursor
W0032040cellular_componentsmall-subunit processome
W0042254biological_processribosome biogenesis
W0042273biological_processribosomal large subunit biogenesis
W0070180molecular_functionlarge ribosomal subunit rRNA binding
X0000027biological_processribosomal large subunit assembly
X0002181biological_processcytoplasmic translation
X0003723molecular_functionRNA binding
X0003735molecular_functionstructural constituent of ribosome
X0005515molecular_functionprotein binding
X0005737cellular_componentcytoplasm
X0005829cellular_componentcytosol
X0005840cellular_componentribosome
X0006412biological_processtranslation
X0019843molecular_functionrRNA binding
X0022625cellular_componentcytosolic large ribosomal subunit
X0030687cellular_componentpreribosome, large subunit precursor
X1990904cellular_componentribonucleoprotein complex
Y0002181biological_processcytoplasmic translation
Y0003723molecular_functionRNA binding
Y0003735molecular_functionstructural constituent of ribosome
Y0005737cellular_componentcytoplasm
Y0005829cellular_componentcytosol
Y0005840cellular_componentribosome
Y0006412biological_processtranslation
Y0015934cellular_componentlarge ribosomal subunit
Y0022625cellular_componentcytosolic large ribosomal subunit
Y0032991cellular_componentprotein-containing complex
Y0042273biological_processribosomal large subunit biogenesis
Y0043232cellular_componentintracellular non-membrane-bounded organelle
Y1990904cellular_componentribonucleoprotein complex
Z0002181biological_processcytoplasmic translation
Z0003735molecular_functionstructural constituent of ribosome
Z0005737cellular_componentcytoplasm
Z0005829cellular_componentcytosol
Z0005840cellular_componentribosome
Z0006412biological_processtranslation
Z0022625cellular_componentcytosolic large ribosomal subunit
Z1990904cellular_componentribonucleoprotein complex
a0002181biological_processcytoplasmic translation
a0003723molecular_functionRNA binding
a0003735molecular_functionstructural constituent of ribosome
a0005634cellular_componentnucleus
a0005737cellular_componentcytoplasm
a0005829cellular_componentcytosol
a0005840cellular_componentribosome
a0006412biological_processtranslation
a0015934cellular_componentlarge ribosomal subunit
a0022625cellular_componentcytosolic large ribosomal subunit
a0043232cellular_componentintracellular non-membrane-bounded organelle
a1990904cellular_componentribonucleoprotein complex
b0000054biological_processribosomal subunit export from nucleus
b0003723molecular_functionRNA binding
b0003924molecular_functionGTPase activity
b0005515molecular_functionprotein binding
b0005525molecular_functionGTP binding
b0005634cellular_componentnucleus
b0005730cellular_componentnucleolus
b0005737cellular_componentcytoplasm
b0006364biological_processrRNA processing
b0030687cellular_componentpreribosome, large subunit precursor
b0042254biological_processribosome biogenesis
b0042273biological_processribosomal large subunit biogenesis
b1902626biological_processassembly of large subunit precursor of preribosome
c0002181biological_processcytoplasmic translation
c0003723molecular_functionRNA binding
c0003735molecular_functionstructural constituent of ribosome
c0005737cellular_componentcytoplasm
c0005829cellular_componentcytosol
c0005840cellular_componentribosome
c0006364biological_processrRNA processing
c0022625cellular_componentcytosolic large ribosomal subunit
c0030627molecular_functionpre-mRNA 5'-splice site binding
c0048025biological_processnegative regulation of mRNA splicing, via spliceosome
c1990904cellular_componentribonucleoprotein complex
d0002181biological_processcytoplasmic translation
d0003735molecular_functionstructural constituent of ribosome
d0005737cellular_componentcytoplasm
d0005829cellular_componentcytosol
d0005840cellular_componentribosome
d0006412biological_processtranslation
d0006450biological_processregulation of translational fidelity
d0022625cellular_componentcytosolic large ribosomal subunit
d1990904cellular_componentribonucleoprotein complex
e0002181biological_processcytoplasmic translation
e0003735molecular_functionstructural constituent of ribosome
e0005737cellular_componentcytoplasm
e0005829cellular_componentcytosol
e0005840cellular_componentribosome
e0006412biological_processtranslation
e0022625cellular_componentcytosolic large ribosomal subunit
e1990904cellular_componentribonucleoprotein complex
f0000027biological_processribosomal large subunit assembly
f0002181biological_processcytoplasmic translation
f0003735molecular_functionstructural constituent of ribosome
f0005737cellular_componentcytoplasm
f0005829cellular_componentcytosol
f0005840cellular_componentribosome
f0006364biological_processrRNA processing
f0006412biological_processtranslation
f0022625cellular_componentcytosolic large ribosomal subunit
f0042273biological_processribosomal large subunit biogenesis
f1990904cellular_componentribonucleoprotein complex
g0002181biological_processcytoplasmic translation
g0003735molecular_functionstructural constituent of ribosome
g0005737cellular_componentcytoplasm
g0005829cellular_componentcytosol
g0005840cellular_componentribosome
g0006412biological_processtranslation
g0022625cellular_componentcytosolic large ribosomal subunit
g0030687cellular_componentpreribosome, large subunit precursor
g0042254biological_processribosome biogenesis
g1990904cellular_componentribonucleoprotein complex
h0000463biological_processmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
h0002181biological_processcytoplasmic translation
h0003729molecular_functionmRNA binding
h0003735molecular_functionstructural constituent of ribosome
h0005737cellular_componentcytoplasm
h0005829cellular_componentcytosol
h0005840cellular_componentribosome
h0006412biological_processtranslation
h0022625cellular_componentcytosolic large ribosomal subunit
h0030687cellular_componentpreribosome, large subunit precursor
h1990904cellular_componentribonucleoprotein complex
i0002181biological_processcytoplasmic translation
i0003723molecular_functionRNA binding
i0003735molecular_functionstructural constituent of ribosome
i0005737cellular_componentcytoplasm
i0005829cellular_componentcytosol
i0005840cellular_componentribosome
i0006412biological_processtranslation
i0022625cellular_componentcytosolic large ribosomal subunit
i1990904cellular_componentribonucleoprotein complex
j0000448biological_processcleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
j0002181biological_processcytoplasmic translation
j0003723molecular_functionRNA binding
j0003735molecular_functionstructural constituent of ribosome
j0005737cellular_componentcytoplasm
j0005829cellular_componentcytosol
j0005840cellular_componentribosome
j0006412biological_processtranslation
j0008270molecular_functionzinc ion binding
j0019843molecular_functionrRNA binding
j0022625cellular_componentcytosolic large ribosomal subunit
j0030687cellular_componentpreribosome, large subunit precursor
j0044391cellular_componentribosomal subunit
j0046872molecular_functionmetal ion binding
j1990904cellular_componentribonucleoprotein complex
k0002181biological_processcytoplasmic translation
k0003735molecular_functionstructural constituent of ribosome
k0005737cellular_componentcytoplasm
k0005829cellular_componentcytosol
k0005840cellular_componentribosome
k0006412biological_processtranslation
k0022618biological_processprotein-RNA complex assembly
k0022625cellular_componentcytosolic large ribosomal subunit
k1990904cellular_componentribonucleoprotein complex
l0002181biological_processcytoplasmic translation
l0003735molecular_functionstructural constituent of ribosome
l0005515molecular_functionprotein binding
l0005737cellular_componentcytoplasm
l0005829cellular_componentcytosol
l0005840cellular_componentribosome
l0006412biological_processtranslation
l0022625cellular_componentcytosolic large ribosomal subunit
l1990904cellular_componentribonucleoprotein complex
m0000055biological_processribosomal large subunit export from nucleus
m0003924molecular_functionGTPase activity
m0005515molecular_functionprotein binding
m0005525molecular_functionGTP binding
m0005634cellular_componentnucleus
m0005654cellular_componentnucleoplasm
m0005730cellular_componentnucleolus
m0030687cellular_componentpreribosome, large subunit precursor
m0042254biological_processribosome biogenesis
m0070180molecular_functionlarge ribosomal subunit rRNA binding
m2000200biological_processregulation of ribosomal subunit export from nucleus
n0000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
n0000463biological_processmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
n0000466biological_processmaturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
n0003723molecular_functionRNA binding
n0003729molecular_functionmRNA binding
n0005515molecular_functionprotein binding
n0005634cellular_componentnucleus
n0005654cellular_componentnucleoplasm
n0005730cellular_componentnucleolus
n0006364biological_processrRNA processing
n0030687cellular_componentpreribosome, large subunit precursor
n0042254biological_processribosome biogenesis
n0042273biological_processribosomal large subunit biogenesis
n0043021molecular_functionribonucleoprotein complex binding
n0070180molecular_functionlarge ribosomal subunit rRNA binding
n0070545cellular_componentPeBoW complex
o0000463biological_processmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
o0003674molecular_functionmolecular_function
o0003676molecular_functionnucleic acid binding
o0003723molecular_functionRNA binding
o0005515molecular_functionprotein binding
o0005634cellular_componentnucleus
o0005730cellular_componentnucleolus
o0005737cellular_componentcytoplasm
o0006364biological_processrRNA processing
o0019843molecular_functionrRNA binding
o0030687cellular_componentpreribosome, large subunit precursor
o0042254biological_processribosome biogenesis
o0042273biological_processribosomal large subunit biogenesis
o1990904cellular_componentribonucleoprotein complex
p0002181biological_processcytoplasmic translation
p0003735molecular_functionstructural constituent of ribosome
p0005737cellular_componentcytoplasm
p0005829cellular_componentcytosol
p0005840cellular_componentribosome
p0006412biological_processtranslation
p0022625cellular_componentcytosolic large ribosomal subunit
p0044391cellular_componentribosomal subunit
p0046872molecular_functionmetal ion binding
p0070180molecular_functionlarge ribosomal subunit rRNA binding
p1990904cellular_componentribonucleoprotein complex
q0000027biological_processribosomal large subunit assembly
q0000055biological_processribosomal large subunit export from nucleus
q0000176cellular_componentnuclear exosome (RNase complex)
q0000460biological_processmaturation of 5.8S rRNA
q0000463biological_processmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
q0003723molecular_functionRNA binding
q0005515molecular_functionprotein binding
q0005634cellular_componentnucleus
q0005654cellular_componentnucleoplasm
q0005730cellular_componentnucleolus
q0006364biological_processrRNA processing
q0008097molecular_function5S rRNA binding
q0019843molecular_functionrRNA binding
q0042254biological_processribosome biogenesis
r0000460biological_processmaturation of 5.8S rRNA
r0000463biological_processmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
r0000466biological_processmaturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
r0000470biological_processmaturation of LSU-rRNA
r0003674molecular_functionmolecular_function
r0005515molecular_functionprotein binding
r0005634cellular_componentnucleus
r0005730cellular_componentnucleolus
r0006364biological_processrRNA processing
r0030687cellular_componentpreribosome, large subunit precursor
r0042254biological_processribosome biogenesis
r0042273biological_processribosomal large subunit biogenesis
s0000055biological_processribosomal large subunit export from nucleus
s0000463biological_processmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
s0003723molecular_functionRNA binding
s0003729molecular_functionmRNA binding
s0003924molecular_functionGTPase activity
s0005515molecular_functionprotein binding
s0005525molecular_functionGTP binding
s0005634cellular_componentnucleus
s0005730cellular_componentnucleolus
s0015031biological_processprotein transport
s0030687cellular_componentpreribosome, large subunit precursor
s0042254biological_processribosome biogenesis
t0000463biological_processmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
t0000465biological_processexonucleolytic trimming to generate mature 5'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
t0003723molecular_functionRNA binding
t0003729molecular_functionmRNA binding
t0003735molecular_functionstructural constituent of ribosome
t0005515molecular_functionprotein binding
t0005634cellular_componentnucleus
t0005730cellular_componentnucleolus
t0022625cellular_componentcytosolic large ribosomal subunit
t0030687cellular_componentpreribosome, large subunit precursor
t0042134molecular_functionrRNA primary transcript binding
t0042254biological_processribosome biogenesis
t0042273biological_processribosomal large subunit biogenesis
u0001671molecular_functionATPase activator activity
u0005634cellular_componentnucleus
u0005730cellular_componentnucleolus
u0005737cellular_componentcytoplasm
u0030687cellular_componentpreribosome, large subunit precursor
u0032781biological_processpositive regulation of ATP-dependent activity
u0042254biological_processribosome biogenesis
u0042273biological_processribosomal large subunit biogenesis
u0051117molecular_functionATPase binding
u1902626biological_processassembly of large subunit precursor of preribosome
v0000027biological_processribosomal large subunit assembly
v0000463biological_processmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
v0000466biological_processmaturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
v0000470biological_processmaturation of LSU-rRNA
v0005515molecular_functionprotein binding
v0005634cellular_componentnucleus
v0005730cellular_componentnucleolus
v0006364biological_processrRNA processing
v0008097molecular_function5S rRNA binding
v0008312molecular_function7S RNA binding
v0019843molecular_functionrRNA binding
v0030687cellular_componentpreribosome, large subunit precursor
v1902626biological_processassembly of large subunit precursor of preribosome
w0000055biological_processribosomal large subunit export from nucleus
w0000447biological_processendonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
w0003674molecular_functionmolecular_function
w0005515molecular_functionprotein binding
w0005634cellular_componentnucleus
w0005654cellular_componentnucleoplasm
w0005730cellular_componentnucleolus
w0030687cellular_componentpreribosome, large subunit precursor
w0034399cellular_componentnuclear periphery
w0042254biological_processribosome biogenesis
w0042273biological_processribosomal large subunit biogenesis
x0000027biological_processribosomal large subunit assembly
x0003674molecular_functionmolecular_function
x0005515molecular_functionprotein binding
x0005634cellular_componentnucleus
x0005730cellular_componentnucleolus
x0042254biological_processribosome biogenesis
x0110136biological_processprotein-RNA complex remodeling
y0000054biological_processribosomal subunit export from nucleus
y0000460biological_processmaturation of 5.8S rRNA
y0000463biological_processmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
y0000466biological_processmaturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
y0000470biological_processmaturation of LSU-rRNA
y0003743molecular_functiontranslation initiation factor activity
y0005515molecular_functionprotein binding
y0005634cellular_componentnucleus
y0005730cellular_componentnucleolus
y0005737cellular_componentcytoplasm
y0005829cellular_componentcytosol
y0006364biological_processrRNA processing
y0006412biological_processtranslation
y0006413biological_processtranslational initiation
y0030687cellular_componentpreribosome, large subunit precursor
y0042254biological_processribosome biogenesis
y0042256biological_processcytosolic ribosome assembly
y0042273biological_processribosomal large subunit biogenesis
y0043022molecular_functionribosome binding
y0043023molecular_functionribosomal large subunit binding
y1902626biological_processassembly of large subunit precursor of preribosome
z0003674molecular_functionmolecular_function
z0005634cellular_componentnucleus
z0005730cellular_componentnucleolus
z0008150biological_processbiological_process
z0030687cellular_componentpreribosome, large subunit precursor
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN I 201
ChainResidue
ICYS51
ICYS54
IHIS67
IHIS73

site_idAC2
Number of Residues18
DetailsBINDING SITE FOR RESIDUE GTP b 701
ChainResidue
bSER182
bASP193
bVAL194
bPRO196
bTHR201
bASP220
bASN288
bLYS289
bASP291
bSER321
bCYS322
bGLN323
bMG702
bASN177
bVAL178
bGLY179
bLYS180
bSER181

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG b 702
ChainResidue
bGLN195
bTYR197
bTHR200
bGTP701

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN j 100
ChainResidue
jCYS19
jCYS22
jCYS34
jCYS37

site_idAC5
Number of Residues21
DetailsBINDING SITE FOR RESIDUE GTP m 501
ChainResidue
1U2318
mASN260
mLYS261
mASP263
mLEU264
mHIS287
mALA288
mPRO324
mASN325
mTHR326
mGLY327
mLYS328
mSER329
mSER330
mVAL343
mALA344
mPRO345
mPRO347
mGLU349
mTHR350
mMG502

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG m 502
ChainResidue
mALA344
mILE346
mPRO347
mGTP501

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN p 501
ChainResidue
pCYS39
pCYS42
pCYS57
pCYS59
pCYS60

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN u 201
ChainResidue
uCYS9
uARG33
uLYS35
uCYS36
uTRP51

Functional Information from PROSITE/UniProt
site_idPS00028
Number of Residues23
DetailsZINC_FINGER_C2H2_1 Zinc finger C2H2 type domain signature. Cih..CakyMetaialktHlkgkvH
ChainResidueDetails
ICYS51-HIS73

site_idPS00049
Number of Residues27
DetailsRIBOSOMAL_L14 Ribosomal protein L14 signature. AIVVrqakswrrr.DGvflyFedNagVI
ChainResidueDetails
VALA76-ILE102

site_idPS00050
Number of Residues16
DetailsRIBOSOMAL_L23 Ribosomal protein L23 signature. KKAYVRLTadydaldI
ChainResidueDetails
XLYS120-ILE135

site_idPS00051
Number of Residues17
DetailsRIBOSOMAL_L39E Ribosomal protein L39e signature. RTnntIryNakrRNWRR
ChainResidueDetails
lARG30-ARG46

site_idPS00358
Number of Residues17
DetailsRIBOSOMAL_L5 Ribosomal protein L5 signature. LeqLSGQtpVqSkARyT
ChainResidueDetails
JLEU37-THR53

site_idPS00464
Number of Residues25
DetailsRIBOSOMAL_L22 Ribosomal protein L22 signature. RrrTyRAhGRinkyesspSHIELvV
ChainResidueDetails
PARG126-VAL150

site_idPS00467
Number of Residues12
DetailsRIBOSOMAL_L2 Ribosomal protein L2 signature. PktRGVAmNPvD
ChainResidueDetails
APRO197-ASP208

site_idPS00474
Number of Residues24
DetailsRIBOSOMAL_L3 Ribosomal protein L3 signature. FeqnemiDaiAvTkGHGfeGvthR
ChainResidueDetails
BPHE209-ARG232

site_idPS00475
Number of Residues32
DetailsRIBOSOMAL_L15 Ribosomal protein L15 signature. KILGkGrIpnvp.ViVkarfVSklAeekIraaG
ChainResidueDetails
aLYS111-GLY142

site_idPS00526
Number of Residues20
DetailsRIBOSOMAL_L19E Ribosomal protein L19e signature. QKRLaAsvvgVGkrkVWLDP
ChainResidueDetails
RGLN7-PRO26

site_idPS00579
Number of Residues15
DetailsRIBOSOMAL_L29 Ribosomal protein L29 signature. SLPKIKtVRKSIACV
ChainResidueDetails
hSER40-VAL54

site_idPS00580
Number of Residues21
DetailsRIBOSOMAL_L32E Ribosomal protein L32e signature. FkRhhsdRyhRVaen..WRKqkG
ChainResidueDetails
ePHE17-GLY37

site_idPS00634
Number of Residues33
DetailsRIBOSOMAL_L30 Ribosomal protein L30 signature. ILslLrLvEtnTgVfvkltknvypLLkvIapYV
ChainResidueDetails
tILE162-VAL194
FVAL102-VAL134

site_idPS00678
Number of Residues15
DetailsWD_REPEATS_1 Trp-Asp (WD) repeats signature. MVTGagDnTARIWDC
ChainResidueDetails
xMET159-CYS173
xLEU251-THR265
xLEU292-ILE306
xILE417-GLY431
xLEU459-VAL473

site_idPS00700
Number of Residues22
DetailsRIBOSOMAL_L6_2 Ribosomal protein L6 signature 2. QicrVrnKdiRkFlDGIYVshK
ChainResidueDetails
HGLN163-LYS184

site_idPS00709
Number of Residues25
DetailsRIBOSOMAL_L30E_1 Ribosomal protein L30e signature 1. SgkytlGyKstVKslRqGksKlIII
ChainResidueDetails
cSER20-ILE44

site_idPS00783
Number of Residues24
DetailsRIBOSOMAL_L13 Ribosomal protein L13 signature. LRGMVShktarGKaalerLkVFeG
ChainResidueDetails
OLEU84-GLY107

site_idPS00939
Number of Residues27
DetailsRIBOSOMAL_L1E Ribosomal protein L1e signature. NhneKryATaSAIaATAvaslvlaRGH
ChainResidueDetails
CASN114-HIS140

site_idPS00993
Number of Residues21
DetailsRIBOSOMAL_L30E_2 Ribosomal protein L30e signature 2. ELGTavGKlfrvgvVsIlEaG
ChainResidueDetails
cGLU76-GLY96

site_idPS01077
Number of Residues20
DetailsRIBOSOMAL_L37E Ribosomal protein L37e signature. GTpSfGkRhnks.HtlCnRCG
ChainResidueDetails
jGLY4-GLY23

site_idPS01082
Number of Residues18
DetailsRIBOSOMAL_L7AE Ribosomal protein L7Ae signature. CkkmgVPYaiVkGKarLG
ChainResidueDetails
GCYS170-GLY187

site_idPS01104
Number of Residues15
DetailsRIBOSOMAL_L13E Ribosomal protein L13e signature. RaGRGFTLaEVkaaG
ChainResidueDetails
LARG70-GLY84

site_idPS01105
Number of Residues22
DetailsRIBOSOMAL_L35AE Ribosomal protein L35Ae signature. GKVtRtHGnsGvVrAtFrnnLP
ChainResidueDetails
fGLY69-PRO90

site_idPS01106
Number of Residues18
DetailsRIBOSOMAL_L18E Ribosomal protein L18e signature. KaLflSKinRPpVSVsRI
ChainResidueDetails
QLYS50-ILE67

site_idPS01107
Number of Residues12
DetailsRIBOSOMAL_L27E Ribosomal protein L27e signature. GKNqWFFskLRF
ChainResidueDetails
ZGLY125-PHE136

site_idPS01108
Number of Residues18
DetailsRIBOSOMAL_L24 Ribosomal protein L24 signature. DDeVlVVrGskKGqe.GkI
ChainResidueDetails
YASP53-ILE70

site_idPS01144
Number of Residues15
DetailsRIBOSOMAL_L31E Ribosomal protein L31e signature. VRLApeLNqAiWkRG
ChainResidueDetails
dVAL49-GLY63

site_idPS01145
Number of Residues14
DetailsRIBOSOMAL_L34E Ribosomal protein L34e signature. TrSnKikvvKTPGG
ChainResidueDetails
gTHR15-GLY28

site_idPS01170
Number of Residues19
DetailsRIBOSOMAL_L6E Ribosomal protein L6e signature. NgvPLRRvnarYVIATSt.K
ChainResidueDetails
EASN72-LYS90

site_idPS01171
Number of Residues26
DetailsRIBOSOMAL_L21E Ribosomal protein L21e signature. GDiVdikangsiqk.GmpHkfYqGkTG
ChainResidueDetails
TGLY37-GLY62

site_idPS01190
Number of Residues11
DetailsRIBOSOMAL_L36E Ribosomal protein L36e signature. PYERRlIDLIR
ChainResidueDetails
iPRO52-ARG62

site_idPS01194
Number of Residues24
DetailsRIBOSOMAL_L15E Ribosomal protein L15e signature. DKARrLGYkAkqGFVIYRvRVrRG
ChainResidueDetails
NASP46-GLY69

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsMOD_RES: Phosphoserine; by CK1 => ECO:0000255|HAMAP-Rule:MF_03132
ChainResidueDetails
ySER174
ySER175
sASP336
cLYS83

site_idSWS_FT_FI2
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:17330950, ECO:0007744|PubMed:19779198
ChainResidueDetails
ySER231
jCYS22
jCYS34
jCYS37
RLYS146
RLYS186

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:17330950, ECO:0007744|PubMed:18407956, ECO:0007744|PubMed:19779198
ChainResidueDetails
tTHR120
ALYS93
ALYS119
ALYS145

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:17287358, ECO:0007744|PubMed:18407956
ChainResidueDetails
tSER278

site_idSWS_FT_FI5
Number of Residues3
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0007744|PubMed:22106047
ChainResidueDetails
BLYS39
BLYS136

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon