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3J6E

Energy minimized average structure of Microtubules stabilized by GmpCpp

Functional Information from GO Data
ChainGOidnamespacecontents
A0000226biological_processmicrotubule cytoskeleton organization
A0000278biological_processmitotic cell cycle
A0005200molecular_functionstructural constituent of cytoskeleton
A0005525molecular_functionGTP binding
A0005737cellular_componentcytoplasm
A0005856cellular_componentcytoskeleton
A0005874cellular_componentmicrotubule
A0007017biological_processmicrotubule-based process
A0016787molecular_functionhydrolase activity
A0031514cellular_componentmotile cilium
A0046872molecular_functionmetal ion binding
B0000226biological_processmicrotubule cytoskeleton organization
B0000278biological_processmitotic cell cycle
B0003924molecular_functionGTPase activity
B0005200molecular_functionstructural constituent of cytoskeleton
B0005515molecular_functionprotein binding
B0005525molecular_functionGTP binding
B0005737cellular_componentcytoplasm
B0005856cellular_componentcytoskeleton
B0005874cellular_componentmicrotubule
B0007017biological_processmicrotubule-based process
B0046872molecular_functionmetal ion binding
C0000226biological_processmicrotubule cytoskeleton organization
C0000278biological_processmitotic cell cycle
C0005200molecular_functionstructural constituent of cytoskeleton
C0005525molecular_functionGTP binding
C0005737cellular_componentcytoplasm
C0005856cellular_componentcytoskeleton
C0005874cellular_componentmicrotubule
C0007017biological_processmicrotubule-based process
C0016787molecular_functionhydrolase activity
C0031514cellular_componentmotile cilium
C0046872molecular_functionmetal ion binding
D0000226biological_processmicrotubule cytoskeleton organization
D0000278biological_processmitotic cell cycle
D0003924molecular_functionGTPase activity
D0005200molecular_functionstructural constituent of cytoskeleton
D0005515molecular_functionprotein binding
D0005525molecular_functionGTP binding
D0005737cellular_componentcytoplasm
D0005856cellular_componentcytoskeleton
D0005874cellular_componentmicrotubule
D0007017biological_processmicrotubule-based process
D0046872molecular_functionmetal ion binding
E0000226biological_processmicrotubule cytoskeleton organization
E0000278biological_processmitotic cell cycle
E0005200molecular_functionstructural constituent of cytoskeleton
E0005525molecular_functionGTP binding
E0005737cellular_componentcytoplasm
E0005856cellular_componentcytoskeleton
E0005874cellular_componentmicrotubule
E0007017biological_processmicrotubule-based process
E0016787molecular_functionhydrolase activity
E0031514cellular_componentmotile cilium
E0046872molecular_functionmetal ion binding
F0000226biological_processmicrotubule cytoskeleton organization
F0000278biological_processmitotic cell cycle
F0003924molecular_functionGTPase activity
F0005200molecular_functionstructural constituent of cytoskeleton
F0005515molecular_functionprotein binding
F0005525molecular_functionGTP binding
F0005737cellular_componentcytoplasm
F0005856cellular_componentcytoskeleton
F0005874cellular_componentmicrotubule
F0007017biological_processmicrotubule-based process
F0046872molecular_functionmetal ion binding
G0000226biological_processmicrotubule cytoskeleton organization
G0000278biological_processmitotic cell cycle
G0005200molecular_functionstructural constituent of cytoskeleton
G0005525molecular_functionGTP binding
G0005737cellular_componentcytoplasm
G0005856cellular_componentcytoskeleton
G0005874cellular_componentmicrotubule
G0007017biological_processmicrotubule-based process
G0016787molecular_functionhydrolase activity
G0031514cellular_componentmotile cilium
G0046872molecular_functionmetal ion binding
H0000226biological_processmicrotubule cytoskeleton organization
H0000278biological_processmitotic cell cycle
H0003924molecular_functionGTPase activity
H0005200molecular_functionstructural constituent of cytoskeleton
H0005515molecular_functionprotein binding
H0005525molecular_functionGTP binding
H0005737cellular_componentcytoplasm
H0005856cellular_componentcytoskeleton
H0005874cellular_componentmicrotubule
H0007017biological_processmicrotubule-based process
H0046872molecular_functionmetal ion binding
I0000226biological_processmicrotubule cytoskeleton organization
I0000278biological_processmitotic cell cycle
I0005200molecular_functionstructural constituent of cytoskeleton
I0005525molecular_functionGTP binding
I0005737cellular_componentcytoplasm
I0005856cellular_componentcytoskeleton
I0005874cellular_componentmicrotubule
I0007017biological_processmicrotubule-based process
I0016787molecular_functionhydrolase activity
I0031514cellular_componentmotile cilium
I0046872molecular_functionmetal ion binding
J0000226biological_processmicrotubule cytoskeleton organization
J0000278biological_processmitotic cell cycle
J0003924molecular_functionGTPase activity
J0005200molecular_functionstructural constituent of cytoskeleton
J0005515molecular_functionprotein binding
J0005525molecular_functionGTP binding
J0005737cellular_componentcytoplasm
J0005856cellular_componentcytoskeleton
J0005874cellular_componentmicrotubule
J0007017biological_processmicrotubule-based process
J0046872molecular_functionmetal ion binding
K0000226biological_processmicrotubule cytoskeleton organization
K0000278biological_processmitotic cell cycle
K0005200molecular_functionstructural constituent of cytoskeleton
K0005525molecular_functionGTP binding
K0005737cellular_componentcytoplasm
K0005856cellular_componentcytoskeleton
K0005874cellular_componentmicrotubule
K0007017biological_processmicrotubule-based process
K0016787molecular_functionhydrolase activity
K0031514cellular_componentmotile cilium
K0046872molecular_functionmetal ion binding
L0000226biological_processmicrotubule cytoskeleton organization
L0000278biological_processmitotic cell cycle
L0003924molecular_functionGTPase activity
L0005200molecular_functionstructural constituent of cytoskeleton
L0005515molecular_functionprotein binding
L0005525molecular_functionGTP binding
L0005737cellular_componentcytoplasm
L0005856cellular_componentcytoskeleton
L0005874cellular_componentmicrotubule
L0007017biological_processmicrotubule-based process
L0046872molecular_functionmetal ion binding
M0000226biological_processmicrotubule cytoskeleton organization
M0000278biological_processmitotic cell cycle
M0005200molecular_functionstructural constituent of cytoskeleton
M0005525molecular_functionGTP binding
M0005737cellular_componentcytoplasm
M0005856cellular_componentcytoskeleton
M0005874cellular_componentmicrotubule
M0007017biological_processmicrotubule-based process
M0016787molecular_functionhydrolase activity
M0031514cellular_componentmotile cilium
M0046872molecular_functionmetal ion binding
N0000226biological_processmicrotubule cytoskeleton organization
N0000278biological_processmitotic cell cycle
N0003924molecular_functionGTPase activity
N0005200molecular_functionstructural constituent of cytoskeleton
N0005515molecular_functionprotein binding
N0005525molecular_functionGTP binding
N0005737cellular_componentcytoplasm
N0005856cellular_componentcytoskeleton
N0005874cellular_componentmicrotubule
N0007017biological_processmicrotubule-based process
N0046872molecular_functionmetal ion binding
O0000226biological_processmicrotubule cytoskeleton organization
O0000278biological_processmitotic cell cycle
O0005200molecular_functionstructural constituent of cytoskeleton
O0005525molecular_functionGTP binding
O0005737cellular_componentcytoplasm
O0005856cellular_componentcytoskeleton
O0005874cellular_componentmicrotubule
O0007017biological_processmicrotubule-based process
O0016787molecular_functionhydrolase activity
O0031514cellular_componentmotile cilium
O0046872molecular_functionmetal ion binding
P0000226biological_processmicrotubule cytoskeleton organization
P0000278biological_processmitotic cell cycle
P0003924molecular_functionGTPase activity
P0005200molecular_functionstructural constituent of cytoskeleton
P0005515molecular_functionprotein binding
P0005525molecular_functionGTP binding
P0005737cellular_componentcytoplasm
P0005856cellular_componentcytoskeleton
P0005874cellular_componentmicrotubule
P0007017biological_processmicrotubule-based process
P0046872molecular_functionmetal ion binding
Q0000226biological_processmicrotubule cytoskeleton organization
Q0000278biological_processmitotic cell cycle
Q0005200molecular_functionstructural constituent of cytoskeleton
Q0005525molecular_functionGTP binding
Q0005737cellular_componentcytoplasm
Q0005856cellular_componentcytoskeleton
Q0005874cellular_componentmicrotubule
Q0007017biological_processmicrotubule-based process
Q0016787molecular_functionhydrolase activity
Q0031514cellular_componentmotile cilium
Q0046872molecular_functionmetal ion binding
R0000226biological_processmicrotubule cytoskeleton organization
R0000278biological_processmitotic cell cycle
R0003924molecular_functionGTPase activity
R0005200molecular_functionstructural constituent of cytoskeleton
R0005515molecular_functionprotein binding
R0005525molecular_functionGTP binding
R0005737cellular_componentcytoplasm
R0005856cellular_componentcytoskeleton
R0005874cellular_componentmicrotubule
R0007017biological_processmicrotubule-based process
R0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues18
DetailsBINDING SITE FOR RESIDUE GTP A 501
ChainResidue
AGLY10
ATHR145
AGLY146
AASN206
ATYR224
AASN228
AMG502
AHOH601
AHOH602
AHOH603
AGLN11
AALA12
AGLN15
AALA99
AASN101
ASER140
AGLY143
AGLY144

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 502
ChainResidue
AGTP501
AHOH601
AHOH602
AHOH603
AHOH604

site_idAC3
Number of Residues17
DetailsBINDING SITE FOR RESIDUE G2P B 501
ChainResidue
BGLY10
BGLN11
BCYS12
BGLN15
BALA99
BASN101
BSER140
BGLY144
BTHR145
BGLY146
BGLU183
BASN206
BTYR224
BASN228
BMG502
BHOH601
BHOH602

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG B 502
ChainResidue
BG2P501
BHOH601
BHOH602
BHOH603
BHOH604

site_idAC5
Number of Residues18
DetailsBINDING SITE FOR RESIDUE GTP C 501
ChainResidue
CGLY10
CGLN11
CALA12
CGLN15
CALA99
CASN101
CSER140
CGLY143
CGLY144
CTHR145
CGLY146
CASN206
CTYR224
CASN228
CMG502
CHOH601
CHOH602
CHOH603

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG C 502
ChainResidue
CGTP501
CHOH601
CHOH602
CHOH603
CHOH604

site_idAC7
Number of Residues17
DetailsBINDING SITE FOR RESIDUE G2P D 501
ChainResidue
DGLY10
DGLN11
DCYS12
DGLN15
DALA99
DASN101
DSER140
DGLY144
DTHR145
DGLY146
DGLU183
DASN206
DTYR224
DASN228
DMG502
DHOH601
DHOH602

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG D 502
ChainResidue
DG2P501
DHOH601
DHOH602
DHOH603
DHOH604

site_idAC9
Number of Residues18
DetailsBINDING SITE FOR RESIDUE GTP E 501
ChainResidue
ETHR145
EGLY146
EASN206
ETYR224
EASN228
EMG502
EHOH601
EHOH602
EHOH603
EGLY10
EGLN11
EALA12
EGLN15
EALA99
EASN101
ESER140
EGLY143
EGLY144

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG E 502
ChainResidue
EGTP501
EHOH601
EHOH602
EHOH603
EHOH604

site_idBC2
Number of Residues17
DetailsBINDING SITE FOR RESIDUE G2P F 501
ChainResidue
FGLY10
FGLN11
FCYS12
FGLN15
FALA99
FASN101
FSER140
FGLY144
FTHR145
FGLY146
FGLU183
FASN206
FTYR224
FASN228
FMG502
FHOH601
FHOH602

site_idBC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG F 502
ChainResidue
FG2P501
FHOH601
FHOH602
FHOH603
FHOH604

site_idBC4
Number of Residues18
DetailsBINDING SITE FOR RESIDUE GTP G 501
ChainResidue
GGLY10
GGLN11
GALA12
GGLN15
GALA99
GASN101
GSER140
GGLY143
GGLY144
GTHR145
GGLY146
GASN206
GTYR224
GASN228
GMG502
GHOH601
GHOH602
GHOH603

site_idBC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG G 502
ChainResidue
GGTP501
GHOH601
GHOH602
GHOH603
GHOH604

site_idBC6
Number of Residues17
DetailsBINDING SITE FOR RESIDUE G2P H 501
ChainResidue
HGLY10
HGLN11
HCYS12
HGLN15
HALA99
HASN101
HSER140
HGLY144
HTHR145
HGLY146
HGLU183
HASN206
HTYR224
HASN228
HMG502
HHOH901
HHOH902

site_idBC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG H 502
ChainResidue
HG2P501
HHOH901
HHOH902
HHOH903
HHOH904

site_idBC8
Number of Residues18
DetailsBINDING SITE FOR RESIDUE GTP I 501
ChainResidue
IGLY10
IGLN11
IALA12
IGLN15
IALA99
IASN101
ISER140
IGLY143
IGLY144
ITHR145
IGLY146
IASN206
ITYR224
IASN228
IMG502
IHOH601
IHOH602
IHOH603

site_idBC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG I 502
ChainResidue
IGTP501
IHOH601
IHOH602
IHOH603
IHOH604

site_idCC1
Number of Residues17
DetailsBINDING SITE FOR RESIDUE G2P J 501
ChainResidue
JGLY10
JGLN11
JCYS12
JGLN15
JALA99
JASN101
JSER140
JGLY144
JTHR145
JGLY146
JGLU183
JASN206
JTYR224
JASN228
JMG502
JHOH601
JHOH602

site_idCC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG J 502
ChainResidue
JG2P501
JHOH601
JHOH602
JHOH603
JHOH604

site_idCC3
Number of Residues18
DetailsBINDING SITE FOR RESIDUE GTP K 501
ChainResidue
KGLY10
KGLN11
KALA12
KGLN15
KALA99
KASN101
KSER140
KGLY143
KGLY144
KTHR145
KGLY146
KASN206
KTYR224
KASN228
KMG502
KHOH601
KHOH602
KHOH603

site_idCC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG K 502
ChainResidue
KGTP501
KHOH601
KHOH602
KHOH603
KHOH604

site_idCC5
Number of Residues17
DetailsBINDING SITE FOR RESIDUE G2P L 501
ChainResidue
LGLY10
LGLN11
LCYS12
LGLN15
LALA99
LASN101
LSER140
LGLY144
LTHR145
LGLY146
LGLU183
LASN206
LTYR224
LASN228
LMG502
LHOH601
LHOH602

site_idCC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG L 502
ChainResidue
LG2P501
LHOH601
LHOH602
LHOH603
LHOH604

site_idCC7
Number of Residues18
DetailsBINDING SITE FOR RESIDUE GTP M 501
ChainResidue
MGLY10
MGLN11
MALA12
MGLN15
MALA99
MASN101
MSER140
MGLY143
MGLY144
MTHR145
MGLY146
MASN206
MTYR224
MASN228
MMG502
MHOH601
MHOH602
MHOH603

site_idCC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG M 502
ChainResidue
MGTP501
MHOH601
MHOH602
MHOH603
MHOH604

site_idCC9
Number of Residues17
DetailsBINDING SITE FOR RESIDUE G2P N 501
ChainResidue
NGLY10
NGLN11
NCYS12
NGLN15
NALA99
NASN101
NSER140
NGLY144
NTHR145
NGLY146
NGLU183
NASN206
NTYR224
NASN228
NMG502
NHOH601
NHOH602

site_idDC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG N 502
ChainResidue
NG2P501
NHOH601
NHOH602
NHOH603
NHOH604

site_idDC2
Number of Residues18
DetailsBINDING SITE FOR RESIDUE GTP O 501
ChainResidue
OGLY10
OGLN11
OALA12
OGLN15
OALA99
OASN101
OSER140
OGLY143
OGLY144
OTHR145
OGLY146
OASN206
OTYR224
OASN228
OMG502
OHOH601
OHOH602
OHOH603

site_idDC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG O 502
ChainResidue
OGTP501
OHOH601
OHOH602
OHOH603
OHOH604

site_idDC4
Number of Residues17
DetailsBINDING SITE FOR RESIDUE G2P P 501
ChainResidue
PGLY10
PGLN11
PCYS12
PGLN15
PALA99
PASN101
PSER140
PGLY144
PTHR145
PGLY146
PGLU183
PASN206
PTYR224
PASN228
PMG502
PHOH601
PHOH602

site_idDC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG P 502
ChainResidue
PG2P501
PHOH601
PHOH602
PHOH603
PHOH604

site_idDC6
Number of Residues18
DetailsBINDING SITE FOR RESIDUE GTP Q 501
ChainResidue
QGLY10
QGLN11
QALA12
QGLN15
QALA99
QASN101
QSER140
QGLY143
QGLY144
QTHR145
QGLY146
QASN206
QTYR224
QASN228
QMG502
QHOH601
QHOH602
QHOH603

site_idDC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG Q 502
ChainResidue
QGTP501
QHOH601
QHOH602
QHOH603
QHOH604

site_idDC8
Number of Residues17
DetailsBINDING SITE FOR RESIDUE G2P R 501
ChainResidue
RGLY10
RGLN11
RCYS12
RGLN15
RALA99
RASN101
RSER140
RGLY144
RTHR145
RGLY146
RGLU183
RASN206
RTYR224
RASN228
RMG502
RHOH601
RHOH602

site_idDC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG R 502
ChainResidue
RG2P501
RHOH601
RHOH602
RHOH603
RHOH604

Functional Information from PROSITE/UniProt
site_idPS00227
Number of Residues7
DetailsTUBULIN Tubulin subunits alpha, beta, and gamma signature. GGGTGSG
ChainResidueDetails
AGLY142-GLY148
BGLY142-GLY148

site_idPS00228
Number of Residues4
DetailsTUBULIN_B_AUTOREG Tubulin-beta mRNA autoregulation signal. MREI
ChainResidueDetails
BMET1-ILE4

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues63
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:Q13509
ChainResidueDetails
BGLN11
DGLY144
DTHR145
DGLY146
DASN206
DASN228
FGLN11
FSER140
FGLY144
FTHR145
FGLY146
BSER140
FASN206
FASN228
HGLN11
HSER140
HGLY144
HTHR145
HGLY146
HASN206
HASN228
JGLN11
BGLY144
JSER140
JGLY144
JTHR145
JGLY146
JASN206
JASN228
LGLN11
LSER140
LGLY144
LTHR145
BTHR145
LGLY146
LASN206
LASN228
NGLN11
NSER140
NGLY144
NTHR145
NGLY146
NASN206
NASN228
BGLY146
PGLN11
PSER140
PGLY144
PTHR145
PGLY146
PASN206
PASN228
RGLN11
RSER140
RGLY144
BASN206
RTHR145
RGLY146
RASN206
RASN228
BASN228
DGLN11
DSER140

site_idSWS_FT_FI2
Number of Residues9
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P68363
ChainResidueDetails
BGLU71
CGLU71
CSER140
CGLY144
CTHR145
CTHR179
CASN206
CASN228
EGLN11
EGLU71
ESER140
DGLU71
EGLY144
ETHR145
ETHR179
EASN206
EASN228
GGLN11
GGLU71
GSER140
GGLY144
GTHR145
FGLU71
GTHR179
GASN206
GASN228
IGLN11
IGLU71
ISER140
IGLY144
ITHR145
ITHR179
IASN206
HGLU71
IASN228
KGLN11
KGLU71
KSER140
KGLY144
KTHR145
KTHR179
KASN206
KASN228
MGLN11
JGLU71
MGLU71
MSER140
MGLY144
MTHR145
MTHR179
MASN206
MASN228
OGLN11
OGLU71
OSER140
LGLU71
OGLY144
OTHR145
OTHR179
OASN206
OASN228
QGLN11
QGLU71
QSER140
QGLY144
QTHR145
NGLU71
QTHR179
QASN206
QASN228
PGLU71
RGLU71

site_idSWS_FT_FI3
Number of Residues9
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P99024
ChainResidueDetails
BSER40
DSER40
FSER40
HSER40
JSER40
LSER40
NSER40
PSER40
RSER40

site_idSWS_FT_FI4
Number of Residues9
DetailsMOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P99024
ChainResidueDetails
BLYS60
DLYS60
FLYS60
HLYS60
JLYS60
LLYS60
NLYS60
PLYS60
RLYS60

site_idSWS_FT_FI5
Number of Residues9
DetailsMOD_RES: Phosphoserine; by CDK1 => ECO:0000250|UniProtKB:Q13885
ChainResidueDetails
BSER174
DSER174
FSER174
HSER174
JSER174
LSER174
NSER174
PSER174
RSER174

site_idSWS_FT_FI6
Number of Residues18
DetailsMOD_RES: Phosphothreonine => ECO:0000250|UniProtKB:P07437
ChainResidueDetails
BTHR287
JTHR292
LTHR287
LTHR292
NTHR287
NTHR292
PTHR287
PTHR292
RTHR287
RTHR292
BTHR292
DTHR287
DTHR292
FTHR287
FTHR292
HTHR287
HTHR292
JTHR287

site_idSWS_FT_FI7
Number of Residues9
DetailsMOD_RES: Omega-N-methylarginine => ECO:0000250|UniProtKB:P07437
ChainResidueDetails
BARG320
DARG320
FARG320
HARG320
JARG320
LARG320
NARG320
PARG320
RARG320

site_idSWS_FT_FI8
Number of Residues9
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000250|UniProtKB:P07437
ChainResidueDetails
BLYS60
DLYS60
FLYS60
HLYS60
JLYS60
LLYS60
NLYS60
PLYS60
RLYS60

site_idSWS_FT_FI9
Number of Residues18
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P07437
ChainResidueDetails
JLYS326
LLYS326
NLYS326
PLYS326
RLYS326
BLYS326
DLYS326
FLYS326
HLYS326

226707

PDB entries from 2024-10-30

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