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3IXQ

Structure of ribose 5-phosphate isomerase a from methanocaldococcus jannaschii

Replaces:  2PJM
Functional Information from GO Data
ChainGOidnamespacecontents
A0004751molecular_functionribose-5-phosphate isomerase activity
A0005829cellular_componentcytosol
A0006014biological_processD-ribose metabolic process
A0009052biological_processpentose-phosphate shunt, non-oxidative branch
A0016853molecular_functionisomerase activity
A0043231cellular_componentintracellular membrane-bounded organelle
A0044281biological_processsmall molecule metabolic process
B0004751molecular_functionribose-5-phosphate isomerase activity
B0005829cellular_componentcytosol
B0006014biological_processD-ribose metabolic process
B0009052biological_processpentose-phosphate shunt, non-oxidative branch
B0016853molecular_functionisomerase activity
B0043231cellular_componentintracellular membrane-bounded organelle
B0044281biological_processsmall molecule metabolic process
C0004751molecular_functionribose-5-phosphate isomerase activity
C0005829cellular_componentcytosol
C0006014biological_processD-ribose metabolic process
C0009052biological_processpentose-phosphate shunt, non-oxidative branch
C0016853molecular_functionisomerase activity
C0043231cellular_componentintracellular membrane-bounded organelle
C0044281biological_processsmall molecule metabolic process
D0004751molecular_functionribose-5-phosphate isomerase activity
D0005829cellular_componentcytosol
D0006014biological_processD-ribose metabolic process
D0009052biological_processpentose-phosphate shunt, non-oxidative branch
D0016853molecular_functionisomerase activity
D0043231cellular_componentintracellular membrane-bounded organelle
D0044281biological_processsmall molecule metabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CL A 231
ChainResidue
AGLY98
AGLY100
AGLY101
ACYS102
AGLU106
APGO233

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PGO A 234
ChainResidue
AARG37
ATYR66
AHOH249

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PGO A 232
ChainResidue
AGLY29
ASER30
ATHR31
ALYS124
APGO233
AHOH243
AHOH290
AHOH340

site_idAC4
Number of Residues11
DetailsBINDING SITE FOR RESIDUE PGO A 233
ChainResidue
ATHR28
AASP83
AGLY84
AALA85
AASP86
ALYS97
AGLY98
AGLU106
ACL231
APGO232
AHOH371

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CL B 231
ChainResidue
BGLY98
BGLY100
BGLY101
BCYS102
BGLU106
BPGO233

site_idAC6
Number of Residues12
DetailsBINDING SITE FOR RESIDUE PGO B 233
ChainResidue
BALA85
BASP86
BLYS97
BGLY98
BGLY99
BGLY100
BGLU106
BCL231
BPGO235
BHOH491
BHOH577
BHOH578

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PGO B 234
ChainResidue
BLEU70
BVAL71
BHOH450
BHOH470
BHOH494
DLEU70

site_idAC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PGO B 235
ChainResidue
BLYS7
BGLY29
BSER30
BTHR31
BLYS124
BPGO233
BHOH356
BHOH577

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CL C 231
ChainResidue
CGLY98
CGLY100
CGLY101
CCYS102
CGLU106
CPGO233

site_idBC1
Number of Residues12
DetailsBINDING SITE FOR RESIDUE PGO C 233
ChainResidue
CTHR28
CASP83
CGLY84
CALA85
CASP86
CLYS97
CGLY98
CGLY99
CGLY100
CGLU106
CCL231
CPGO234

site_idBC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PGO C 234
ChainResidue
CGLY29
CSER30
CTHR31
CLYS124
CPGO233
CHOH248
CHOH249
CHOH282
CHOH289

site_idBC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ACT C 227
ChainResidue
CLYS60
CHOH431

site_idBC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CL D 231
ChainResidue
DGLY98
DGLY100
DGLY101
DCYS102
DGLU106
DPGO233

site_idBC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PGO D 232
ChainResidue
DLYS124
DPGO233
DHOH256
DLYS7
DGLY29
DSER30
DTHR31

site_idBC6
Number of Residues10
DetailsBINDING SITE FOR RESIDUE PGO D 233
ChainResidue
DTHR28
DASP83
DGLY84
DALA85
DASP86
DLYS97
DGLY98
DGLU106
DCL231
DPGO232

site_idBC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PGO D 234
ChainResidue
CGLU58
DLEU162
DGLY163
DLYS166
DARG167
DGLY168

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: Proton acceptor => ECO:0000305|PubMed:20054114
ChainResidueDetails
AGLU106
BGLU106
CGLU106
DGLU106

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING:
ChainResidueDetails
ATHR28
BTHR28
CTHR28
DTHR28

site_idSWS_FT_FI3
Number of Residues8
DetailsBINDING: BINDING => ECO:0000305
ChainResidueDetails
AASP83
ALYS97
BASP83
BLYS97
CASP83
CLYS97
DASP83
DLYS97

site_idSWS_FT_FI4
Number of Residues4
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00170
ChainResidueDetails
ALYS124
BLYS124
CLYS124
DLYS124

218853

PDB entries from 2024-04-24

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