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3IWK

Crystal structure of aminoaldehyde dehydrogenase 1 from Pisum sativum (PsAMADH1)

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0005777cellular_componentperoxisome
A0016491molecular_functionoxidoreductase activity
A0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
A0019145molecular_functionaminobutyraldehyde dehydrogenase (NAD+) activity
A0019285biological_processglycine betaine biosynthetic process from choline
A0031402molecular_functionsodium ion binding
A0042803molecular_functionprotein homodimerization activity
A0046872molecular_functionmetal ion binding
A0047107molecular_functiongamma-guanidinobutyraldehyde dehydrogenase (NAD+) activity
A0102244molecular_function3-aminopropanal dehydrogenase (NAD+) activity
A0110095biological_processcellular detoxification of aldehyde
B0000166molecular_functionnucleotide binding
B0005777cellular_componentperoxisome
B0016491molecular_functionoxidoreductase activity
B0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
B0019145molecular_functionaminobutyraldehyde dehydrogenase (NAD+) activity
B0019285biological_processglycine betaine biosynthetic process from choline
B0031402molecular_functionsodium ion binding
B0042803molecular_functionprotein homodimerization activity
B0046872molecular_functionmetal ion binding
B0047107molecular_functiongamma-guanidinobutyraldehyde dehydrogenase (NAD+) activity
B0102244molecular_function3-aminopropanal dehydrogenase (NAD+) activity
B0110095biological_processcellular detoxification of aldehyde
C0000166molecular_functionnucleotide binding
C0005777cellular_componentperoxisome
C0016491molecular_functionoxidoreductase activity
C0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
C0019145molecular_functionaminobutyraldehyde dehydrogenase (NAD+) activity
C0019285biological_processglycine betaine biosynthetic process from choline
C0031402molecular_functionsodium ion binding
C0042803molecular_functionprotein homodimerization activity
C0046872molecular_functionmetal ion binding
C0047107molecular_functiongamma-guanidinobutyraldehyde dehydrogenase (NAD+) activity
C0102244molecular_function3-aminopropanal dehydrogenase (NAD+) activity
C0110095biological_processcellular detoxification of aldehyde
D0000166molecular_functionnucleotide binding
D0005777cellular_componentperoxisome
D0016491molecular_functionoxidoreductase activity
D0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
D0019145molecular_functionaminobutyraldehyde dehydrogenase (NAD+) activity
D0019285biological_processglycine betaine biosynthetic process from choline
D0031402molecular_functionsodium ion binding
D0042803molecular_functionprotein homodimerization activity
D0046872molecular_functionmetal ion binding
D0047107molecular_functiongamma-guanidinobutyraldehyde dehydrogenase (NAD+) activity
D0102244molecular_function3-aminopropanal dehydrogenase (NAD+) activity
D0110095biological_processcellular detoxification of aldehyde
E0000166molecular_functionnucleotide binding
E0005777cellular_componentperoxisome
E0016491molecular_functionoxidoreductase activity
E0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
E0019145molecular_functionaminobutyraldehyde dehydrogenase (NAD+) activity
E0019285biological_processglycine betaine biosynthetic process from choline
E0031402molecular_functionsodium ion binding
E0042803molecular_functionprotein homodimerization activity
E0046872molecular_functionmetal ion binding
E0047107molecular_functiongamma-guanidinobutyraldehyde dehydrogenase (NAD+) activity
E0102244molecular_function3-aminopropanal dehydrogenase (NAD+) activity
E0110095biological_processcellular detoxification of aldehyde
F0000166molecular_functionnucleotide binding
F0005777cellular_componentperoxisome
F0016491molecular_functionoxidoreductase activity
F0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
F0019145molecular_functionaminobutyraldehyde dehydrogenase (NAD+) activity
F0019285biological_processglycine betaine biosynthetic process from choline
F0031402molecular_functionsodium ion binding
F0042803molecular_functionprotein homodimerization activity
F0046872molecular_functionmetal ion binding
F0047107molecular_functiongamma-guanidinobutyraldehyde dehydrogenase (NAD+) activity
F0102244molecular_function3-aminopropanal dehydrogenase (NAD+) activity
F0110095biological_processcellular detoxification of aldehyde
G0000166molecular_functionnucleotide binding
G0005777cellular_componentperoxisome
G0016491molecular_functionoxidoreductase activity
G0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
G0019145molecular_functionaminobutyraldehyde dehydrogenase (NAD+) activity
G0019285biological_processglycine betaine biosynthetic process from choline
G0031402molecular_functionsodium ion binding
G0042803molecular_functionprotein homodimerization activity
G0046872molecular_functionmetal ion binding
G0047107molecular_functiongamma-guanidinobutyraldehyde dehydrogenase (NAD+) activity
G0102244molecular_function3-aminopropanal dehydrogenase (NAD+) activity
G0110095biological_processcellular detoxification of aldehyde
H0000166molecular_functionnucleotide binding
H0005777cellular_componentperoxisome
H0016491molecular_functionoxidoreductase activity
H0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
H0019145molecular_functionaminobutyraldehyde dehydrogenase (NAD+) activity
H0019285biological_processglycine betaine biosynthetic process from choline
H0031402molecular_functionsodium ion binding
H0042803molecular_functionprotein homodimerization activity
H0046872molecular_functionmetal ion binding
H0047107molecular_functiongamma-guanidinobutyraldehyde dehydrogenase (NAD+) activity
H0102244molecular_function3-aminopropanal dehydrogenase (NAD+) activity
H0110095biological_processcellular detoxification of aldehyde
I0000166molecular_functionnucleotide binding
I0005777cellular_componentperoxisome
I0016491molecular_functionoxidoreductase activity
I0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
I0019145molecular_functionaminobutyraldehyde dehydrogenase (NAD+) activity
I0019285biological_processglycine betaine biosynthetic process from choline
I0031402molecular_functionsodium ion binding
I0042803molecular_functionprotein homodimerization activity
I0046872molecular_functionmetal ion binding
I0047107molecular_functiongamma-guanidinobutyraldehyde dehydrogenase (NAD+) activity
I0102244molecular_function3-aminopropanal dehydrogenase (NAD+) activity
I0110095biological_processcellular detoxification of aldehyde
J0000166molecular_functionnucleotide binding
J0005777cellular_componentperoxisome
J0016491molecular_functionoxidoreductase activity
J0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
J0019145molecular_functionaminobutyraldehyde dehydrogenase (NAD+) activity
J0019285biological_processglycine betaine biosynthetic process from choline
J0031402molecular_functionsodium ion binding
J0042803molecular_functionprotein homodimerization activity
J0046872molecular_functionmetal ion binding
J0047107molecular_functiongamma-guanidinobutyraldehyde dehydrogenase (NAD+) activity
J0102244molecular_function3-aminopropanal dehydrogenase (NAD+) activity
J0110095biological_processcellular detoxification of aldehyde
K0000166molecular_functionnucleotide binding
K0005777cellular_componentperoxisome
K0016491molecular_functionoxidoreductase activity
K0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
K0019145molecular_functionaminobutyraldehyde dehydrogenase (NAD+) activity
K0019285biological_processglycine betaine biosynthetic process from choline
K0031402molecular_functionsodium ion binding
K0042803molecular_functionprotein homodimerization activity
K0046872molecular_functionmetal ion binding
K0047107molecular_functiongamma-guanidinobutyraldehyde dehydrogenase (NAD+) activity
K0102244molecular_function3-aminopropanal dehydrogenase (NAD+) activity
K0110095biological_processcellular detoxification of aldehyde
L0000166molecular_functionnucleotide binding
L0005777cellular_componentperoxisome
L0016491molecular_functionoxidoreductase activity
L0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
L0019145molecular_functionaminobutyraldehyde dehydrogenase (NAD+) activity
L0019285biological_processglycine betaine biosynthetic process from choline
L0031402molecular_functionsodium ion binding
L0042803molecular_functionprotein homodimerization activity
L0046872molecular_functionmetal ion binding
L0047107molecular_functiongamma-guanidinobutyraldehyde dehydrogenase (NAD+) activity
L0102244molecular_function3-aminopropanal dehydrogenase (NAD+) activity
L0110095biological_processcellular detoxification of aldehyde
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NA A 504
ChainResidue
AASN27
AILE28
AASP99
ALEU189

site_idAC2
Number of Residues18
DetailsBINDING SITE FOR RESIDUE NAD A 505
ChainResidue
AALA223
AGLY238
ASER239
ATHR242
ALYS245
ALEU261
AGLY262
ACYS294
AGLN341
AGLU393
APHE395
AHOH1411
AHOH1444
APRO160
ATRP161
AGLY218
AHIS219
AGLY222

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NA B 504
ChainResidue
BASN27
BILE28
BASP99
BLEU189

site_idAC4
Number of Residues19
DetailsBINDING SITE FOR RESIDUE NAD B 505
ChainResidue
BPRO160
BTRP161
BGLY218
BHIS219
BGLY222
BALA223
BGLY238
BSER239
BTHR242
BLYS245
BILE246
BGLY262
BCYS294
BGLN341
BLYS344
BGLU393
BPHE395
BHOH1344
BHOH1801

site_idAC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE GOL B 2001
ChainResidue
BTRP494

site_idAC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL B 2002
ChainResidue
BASN162
BTYR163
BMET167
BTRP170
BILE293
BCYS294
BSER295
BTRP459
BHOH1673

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NA C 504
ChainResidue
CASN27
CILE28
CASP99
CLEU189

site_idAC8
Number of Residues18
DetailsBINDING SITE FOR RESIDUE NAD C 505
ChainResidue
CPRO160
CTRP161
CGLU188
CGLY218
CGLY222
CALA223
CGLY238
CSER239
CTHR242
CLYS245
CILE246
CGLY262
CCYS294
CGLN341
CLYS344
CGLU393
CPHE395
CHOH1327

site_idAC9
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL C 2003
ChainResidue
CTYR163
CMET167
CTRP170
CILE293
CCYS294
CSER295
CTRP459
CHOH1671

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE NA D 504
ChainResidue
DASN27
DASP99
DLEU189

site_idBC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE NAD D 505
ChainResidue
DGLY218
DHIS219
DGLY222
DALA223
DSER239
DTHR242
DLYS245
DILE246

site_idBC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE MRD D 2004
ChainResidue
DILE293
DCYS294
DGLN451
DSER453
DTRP459
DASN162
DTYR163
DMET167

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NA E 504
ChainResidue
EASN27
EILE28
EASP99
ELEU189

site_idBC5
Number of Residues21
DetailsBINDING SITE FOR RESIDUE NAD E 505
ChainResidue
EPRO160
ETRP161
EGLU188
EGLY218
EHIS219
EGLY222
EALA223
EGLY238
ESER239
ETHR242
ELYS245
EILE246
ELEU261
EGLY262
ECYS294
EGLN341
ELYS344
EGLU393
EPHE395
EHOH1357
EHOH1443

site_idBC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE NA F 504
ChainResidue
FASN27
FASP99
FLEU189

site_idBC7
Number of Residues20
DetailsBINDING SITE FOR RESIDUE NAD F 505
ChainResidue
FPRO160
FTRP161
FGLY218
FHIS219
FGLY222
FALA223
FGLY238
FSER239
FTHR242
FLYS245
FLEU261
FGLY262
FCYS294
FGLN341
FLYS344
FGLU393
FPHE395
FHOH1345
FHOH1353
FHOH1427

site_idBC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL F 2006
ChainResidue
FASN162
FTYR163
FMET167
FTRP170
FILE293
FCYS294
FSER295
FTRP459
FHOH1448

site_idBC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NA G 504
ChainResidue
GASN27
GILE28
GASP99
GLEU189

site_idCC1
Number of Residues18
DetailsBINDING SITE FOR RESIDUE NAD G 505
ChainResidue
GPRO160
GTRP161
GGLU188
GGLY218
GHIS219
GGLY222
GALA223
GGLY238
GSER239
GTHR242
GLYS245
GCYS294
GGLN341
GLYS344
GGLU393
GPHE395
GHOH1331
GHOH1374

site_idCC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL G 2007
ChainResidue
GTHR385
GASP416

site_idCC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL G 2009
ChainResidue
GASN162
GILE293
GCYS294
GSER295
GTRP459
GHOH1678

site_idCC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL G 2011
ChainResidue
GILE58
GGLY153
GASP232

site_idCC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NA H 504
ChainResidue
HASN27
HASP99
HLEU189
HHOH1206

site_idCC6
Number of Residues19
DetailsBINDING SITE FOR RESIDUE NAD H 505
ChainResidue
HTRP161
HGLU188
HGLY218
HHIS219
HGLY222
HALA223
HGLY238
HSER239
HTHR242
HLYS245
HLEU261
HGLY262
HCYS294
HGLN341
HGLU393
HPHE395
HHOH550
HHOH1329
HHOH1389

site_idCC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL H 2010
ChainResidue
HASN162
HTYR163
HGLU260
HILE293
HCYS294
HSER295
HTRP459
HHOH1233

site_idCC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA I 504
ChainResidue
IASN27
IILE28
IASP99
ILEU189
IHOH1476

site_idCC9
Number of Residues21
DetailsBINDING SITE FOR RESIDUE NAD I 505
ChainResidue
IPRO160
ITRP161
IGLU188
IGLY218
IHIS219
IGLY222
IALA223
IGLY238
ISER239
ITHR242
ILYS245
ILEU261
IGLY262
ICYS294
IGLN341
ILYS344
IGLU393
IPHE395
IHOH1330
IHOH1333
IHOH1751

site_idDC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL I 2012
ChainResidue
IASN162
ITYR163
IILE293
ICYS294
ISER295
ITRP459
IHOH1682

site_idDC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE NA J 504
ChainResidue
JASN27
JASP99
JLEU189

site_idDC3
Number of Residues16
DetailsBINDING SITE FOR RESIDUE NAD J 505
ChainResidue
JPRO160
JTRP161
JGLY218
JGLY222
JALA223
JGLY238
JSER239
JTHR242
JLYS245
JILE246
JGLY262
JCYS294
JGLN341
JGLU393
JPHE395
JHOH1332

site_idDC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE GOL J 2013
ChainResidue
JGLU477

site_idDC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL J 2014
ChainResidue
JASN162
JTYR163
JTRP170
JGLU260
JILE293
JCYS294
JSER295
JTRP459
JHOH1683

site_idDC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NA K 504
ChainResidue
KASN27
KASP99
KLEU189
KHOH1454

site_idDC7
Number of Residues21
DetailsBINDING SITE FOR RESIDUE NAD K 505
ChainResidue
KPRO160
KTRP161
KGLU188
KGLY218
KHIS219
KGLY222
KALA223
KGLY238
KSER239
KTHR242
KLYS245
KLEU261
KGLY262
KCYS294
KGLN341
KLYS344
KGLU393
KPHE395
KHOH746
KHOH1335
KHOH1446

site_idDC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL K 2016
ChainResidue
KASN162
KTYR163
KMET167
KILE293
KCYS294
KSER295
KTRP459
KHOH1451

site_idDC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL K 2018
ChainResidue
KASN412
KASN415
KASP416
KHOH1929
LLYS61
LGOL2005

site_idEC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL K 2019
ChainResidue
KGLU477
LGOL2000

site_idEC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NA L 504
ChainResidue
LASN27
LILE28
LASP99
LLEU189

site_idEC3
Number of Residues19
DetailsBINDING SITE FOR RESIDUE NAD L 505
ChainResidue
LPRO160
LTRP161
LGLU188
LGLY218
LHIS219
LGLY222
LALA223
LGLY238
LSER239
LTHR242
LLYS245
LILE246
LGLY262
LCYS294
LGLN341
LGLU393
LPHE395
LHOH1368
LHOH1445

site_idEC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL L 2000
ChainResidue
KGOL2019
LTRP474

site_idEC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL L 2005
ChainResidue
KGLU408
KILE411
KGOL2018
LARG60
LLYS61

site_idEC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL L 2008
ChainResidue
LASN162
LTYR163
LTRP170
LGLU260
LILE293
LCYS294
LSER295
LTRP459
LHOH1452

site_idEC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL L 2015
ChainResidue
LGLU319
LILE321
LILE323
LHIS368

site_idEC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL L 2017
ChainResidue
KALA241
LGLN252

Functional Information from PROSITE/UniProt
site_idPS00070
Number of Residues12
DetailsALDEHYDE_DEHYDR_CYS Aldehyde dehydrogenases cysteine active site. FfTNGQICSATS
ChainResidueDetails
APHE287-SER298

site_idPS00687
Number of Residues8
DetailsALDEHYDE_DEHYDR_GLU Aldehyde dehydrogenases glutamic acid active site. LELGGKSP
ChainResidueDetails
ALEU259-PRO266

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues12
DetailsActive site: {"description":"Proton acceptor","evidences":[{"source":"PROSITE-ProRule","id":"PRU10007","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues12
DetailsActive site: {"description":"Nucleophile","evidences":[{"source":"PROSITE-ProRule","id":"PRU10008","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues156
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"20026072","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3IWK","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues12
DetailsSite: {"description":"Transition state stabilizer","evidences":[{"source":"UniProtKB","id":"P20000","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

246704

PDB entries from 2025-12-24

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