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3IWK

Crystal structure of aminoaldehyde dehydrogenase 1 from Pisum sativum (PsAMADH1)

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0005777cellular_componentperoxisome
A0016491molecular_functionoxidoreductase activity
A0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
A0019145molecular_functionaminobutyraldehyde dehydrogenase (NAD+) activity
A0019285biological_processglycine betaine biosynthetic process from choline
A0031402molecular_functionsodium ion binding
A0042803molecular_functionprotein homodimerization activity
A0046872molecular_functionmetal ion binding
A0047107molecular_functiongamma-guanidinobutyraldehyde dehydrogenase (NAD+) activity
A0110095biological_processcellular detoxification of aldehyde
B0000166molecular_functionnucleotide binding
B0005777cellular_componentperoxisome
B0016491molecular_functionoxidoreductase activity
B0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
B0019145molecular_functionaminobutyraldehyde dehydrogenase (NAD+) activity
B0019285biological_processglycine betaine biosynthetic process from choline
B0031402molecular_functionsodium ion binding
B0042803molecular_functionprotein homodimerization activity
B0046872molecular_functionmetal ion binding
B0047107molecular_functiongamma-guanidinobutyraldehyde dehydrogenase (NAD+) activity
B0110095biological_processcellular detoxification of aldehyde
C0000166molecular_functionnucleotide binding
C0005777cellular_componentperoxisome
C0016491molecular_functionoxidoreductase activity
C0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
C0019145molecular_functionaminobutyraldehyde dehydrogenase (NAD+) activity
C0019285biological_processglycine betaine biosynthetic process from choline
C0031402molecular_functionsodium ion binding
C0042803molecular_functionprotein homodimerization activity
C0046872molecular_functionmetal ion binding
C0047107molecular_functiongamma-guanidinobutyraldehyde dehydrogenase (NAD+) activity
C0110095biological_processcellular detoxification of aldehyde
D0000166molecular_functionnucleotide binding
D0005777cellular_componentperoxisome
D0016491molecular_functionoxidoreductase activity
D0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
D0019145molecular_functionaminobutyraldehyde dehydrogenase (NAD+) activity
D0019285biological_processglycine betaine biosynthetic process from choline
D0031402molecular_functionsodium ion binding
D0042803molecular_functionprotein homodimerization activity
D0046872molecular_functionmetal ion binding
D0047107molecular_functiongamma-guanidinobutyraldehyde dehydrogenase (NAD+) activity
D0110095biological_processcellular detoxification of aldehyde
E0000166molecular_functionnucleotide binding
E0005777cellular_componentperoxisome
E0016491molecular_functionoxidoreductase activity
E0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
E0019145molecular_functionaminobutyraldehyde dehydrogenase (NAD+) activity
E0019285biological_processglycine betaine biosynthetic process from choline
E0031402molecular_functionsodium ion binding
E0042803molecular_functionprotein homodimerization activity
E0046872molecular_functionmetal ion binding
E0047107molecular_functiongamma-guanidinobutyraldehyde dehydrogenase (NAD+) activity
E0110095biological_processcellular detoxification of aldehyde
F0000166molecular_functionnucleotide binding
F0005777cellular_componentperoxisome
F0016491molecular_functionoxidoreductase activity
F0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
F0019145molecular_functionaminobutyraldehyde dehydrogenase (NAD+) activity
F0019285biological_processglycine betaine biosynthetic process from choline
F0031402molecular_functionsodium ion binding
F0042803molecular_functionprotein homodimerization activity
F0046872molecular_functionmetal ion binding
F0047107molecular_functiongamma-guanidinobutyraldehyde dehydrogenase (NAD+) activity
F0110095biological_processcellular detoxification of aldehyde
G0000166molecular_functionnucleotide binding
G0005777cellular_componentperoxisome
G0016491molecular_functionoxidoreductase activity
G0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
G0019145molecular_functionaminobutyraldehyde dehydrogenase (NAD+) activity
G0019285biological_processglycine betaine biosynthetic process from choline
G0031402molecular_functionsodium ion binding
G0042803molecular_functionprotein homodimerization activity
G0046872molecular_functionmetal ion binding
G0047107molecular_functiongamma-guanidinobutyraldehyde dehydrogenase (NAD+) activity
G0110095biological_processcellular detoxification of aldehyde
H0000166molecular_functionnucleotide binding
H0005777cellular_componentperoxisome
H0016491molecular_functionoxidoreductase activity
H0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
H0019145molecular_functionaminobutyraldehyde dehydrogenase (NAD+) activity
H0019285biological_processglycine betaine biosynthetic process from choline
H0031402molecular_functionsodium ion binding
H0042803molecular_functionprotein homodimerization activity
H0046872molecular_functionmetal ion binding
H0047107molecular_functiongamma-guanidinobutyraldehyde dehydrogenase (NAD+) activity
H0110095biological_processcellular detoxification of aldehyde
I0000166molecular_functionnucleotide binding
I0005777cellular_componentperoxisome
I0016491molecular_functionoxidoreductase activity
I0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
I0019145molecular_functionaminobutyraldehyde dehydrogenase (NAD+) activity
I0019285biological_processglycine betaine biosynthetic process from choline
I0031402molecular_functionsodium ion binding
I0042803molecular_functionprotein homodimerization activity
I0046872molecular_functionmetal ion binding
I0047107molecular_functiongamma-guanidinobutyraldehyde dehydrogenase (NAD+) activity
I0110095biological_processcellular detoxification of aldehyde
J0000166molecular_functionnucleotide binding
J0005777cellular_componentperoxisome
J0016491molecular_functionoxidoreductase activity
J0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
J0019145molecular_functionaminobutyraldehyde dehydrogenase (NAD+) activity
J0019285biological_processglycine betaine biosynthetic process from choline
J0031402molecular_functionsodium ion binding
J0042803molecular_functionprotein homodimerization activity
J0046872molecular_functionmetal ion binding
J0047107molecular_functiongamma-guanidinobutyraldehyde dehydrogenase (NAD+) activity
J0110095biological_processcellular detoxification of aldehyde
K0000166molecular_functionnucleotide binding
K0005777cellular_componentperoxisome
K0016491molecular_functionoxidoreductase activity
K0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
K0019145molecular_functionaminobutyraldehyde dehydrogenase (NAD+) activity
K0019285biological_processglycine betaine biosynthetic process from choline
K0031402molecular_functionsodium ion binding
K0042803molecular_functionprotein homodimerization activity
K0046872molecular_functionmetal ion binding
K0047107molecular_functiongamma-guanidinobutyraldehyde dehydrogenase (NAD+) activity
K0110095biological_processcellular detoxification of aldehyde
L0000166molecular_functionnucleotide binding
L0005777cellular_componentperoxisome
L0016491molecular_functionoxidoreductase activity
L0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
L0019145molecular_functionaminobutyraldehyde dehydrogenase (NAD+) activity
L0019285biological_processglycine betaine biosynthetic process from choline
L0031402molecular_functionsodium ion binding
L0042803molecular_functionprotein homodimerization activity
L0046872molecular_functionmetal ion binding
L0047107molecular_functiongamma-guanidinobutyraldehyde dehydrogenase (NAD+) activity
L0110095biological_processcellular detoxification of aldehyde
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NA A 504
ChainResidue
AASN27
AILE28
AASP99
ALEU189

site_idAC2
Number of Residues18
DetailsBINDING SITE FOR RESIDUE NAD A 505
ChainResidue
AALA223
AGLY238
ASER239
ATHR242
ALYS245
ALEU261
AGLY262
ACYS294
AGLN341
AGLU393
APHE395
AHOH1411
AHOH1444
APRO160
ATRP161
AGLY218
AHIS219
AGLY222

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NA B 504
ChainResidue
BASN27
BILE28
BASP99
BLEU189

site_idAC4
Number of Residues19
DetailsBINDING SITE FOR RESIDUE NAD B 505
ChainResidue
BPRO160
BTRP161
BGLY218
BHIS219
BGLY222
BALA223
BGLY238
BSER239
BTHR242
BLYS245
BILE246
BGLY262
BCYS294
BGLN341
BLYS344
BGLU393
BPHE395
BHOH1344
BHOH1801

site_idAC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE GOL B 2001
ChainResidue
BTRP494

site_idAC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL B 2002
ChainResidue
BASN162
BTYR163
BMET167
BTRP170
BILE293
BCYS294
BSER295
BTRP459
BHOH1673

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NA C 504
ChainResidue
CASN27
CILE28
CASP99
CLEU189

site_idAC8
Number of Residues18
DetailsBINDING SITE FOR RESIDUE NAD C 505
ChainResidue
CPRO160
CTRP161
CGLU188
CGLY218
CGLY222
CALA223
CGLY238
CSER239
CTHR242
CLYS245
CILE246
CGLY262
CCYS294
CGLN341
CLYS344
CGLU393
CPHE395
CHOH1327

site_idAC9
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL C 2003
ChainResidue
CTYR163
CMET167
CTRP170
CILE293
CCYS294
CSER295
CTRP459
CHOH1671

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE NA D 504
ChainResidue
DASN27
DASP99
DLEU189

site_idBC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE NAD D 505
ChainResidue
DGLY218
DHIS219
DGLY222
DALA223
DSER239
DTHR242
DLYS245
DILE246

site_idBC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE MRD D 2004
ChainResidue
DILE293
DCYS294
DGLN451
DSER453
DTRP459
DASN162
DTYR163
DMET167

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NA E 504
ChainResidue
EASN27
EILE28
EASP99
ELEU189

site_idBC5
Number of Residues21
DetailsBINDING SITE FOR RESIDUE NAD E 505
ChainResidue
EPRO160
ETRP161
EGLU188
EGLY218
EHIS219
EGLY222
EALA223
EGLY238
ESER239
ETHR242
ELYS245
EILE246
ELEU261
EGLY262
ECYS294
EGLN341
ELYS344
EGLU393
EPHE395
EHOH1357
EHOH1443

site_idBC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE NA F 504
ChainResidue
FASN27
FASP99
FLEU189

site_idBC7
Number of Residues20
DetailsBINDING SITE FOR RESIDUE NAD F 505
ChainResidue
FPRO160
FTRP161
FGLY218
FHIS219
FGLY222
FALA223
FGLY238
FSER239
FTHR242
FLYS245
FLEU261
FGLY262
FCYS294
FGLN341
FLYS344
FGLU393
FPHE395
FHOH1345
FHOH1353
FHOH1427

site_idBC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL F 2006
ChainResidue
FASN162
FTYR163
FMET167
FTRP170
FILE293
FCYS294
FSER295
FTRP459
FHOH1448

site_idBC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NA G 504
ChainResidue
GASN27
GILE28
GASP99
GLEU189

site_idCC1
Number of Residues18
DetailsBINDING SITE FOR RESIDUE NAD G 505
ChainResidue
GPRO160
GTRP161
GGLU188
GGLY218
GHIS219
GGLY222
GALA223
GGLY238
GSER239
GTHR242
GLYS245
GCYS294
GGLN341
GLYS344
GGLU393
GPHE395
GHOH1331
GHOH1374

site_idCC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL G 2007
ChainResidue
GTHR385
GASP416

site_idCC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL G 2009
ChainResidue
GASN162
GILE293
GCYS294
GSER295
GTRP459
GHOH1678

site_idCC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL G 2011
ChainResidue
GILE58
GGLY153
GASP232

site_idCC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NA H 504
ChainResidue
HASN27
HASP99
HLEU189
HHOH1206

site_idCC6
Number of Residues19
DetailsBINDING SITE FOR RESIDUE NAD H 505
ChainResidue
HTRP161
HGLU188
HGLY218
HHIS219
HGLY222
HALA223
HGLY238
HSER239
HTHR242
HLYS245
HLEU261
HGLY262
HCYS294
HGLN341
HGLU393
HPHE395
HHOH550
HHOH1329
HHOH1389

site_idCC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL H 2010
ChainResidue
HASN162
HTYR163
HGLU260
HILE293
HCYS294
HSER295
HTRP459
HHOH1233

site_idCC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA I 504
ChainResidue
IASN27
IILE28
IASP99
ILEU189
IHOH1476

site_idCC9
Number of Residues21
DetailsBINDING SITE FOR RESIDUE NAD I 505
ChainResidue
IPRO160
ITRP161
IGLU188
IGLY218
IHIS219
IGLY222
IALA223
IGLY238
ISER239
ITHR242
ILYS245
ILEU261
IGLY262
ICYS294
IGLN341
ILYS344
IGLU393
IPHE395
IHOH1330
IHOH1333
IHOH1751

site_idDC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL I 2012
ChainResidue
IASN162
ITYR163
IILE293
ICYS294
ISER295
ITRP459
IHOH1682

site_idDC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE NA J 504
ChainResidue
JASN27
JASP99
JLEU189

site_idDC3
Number of Residues16
DetailsBINDING SITE FOR RESIDUE NAD J 505
ChainResidue
JPRO160
JTRP161
JGLY218
JGLY222
JALA223
JGLY238
JSER239
JTHR242
JLYS245
JILE246
JGLY262
JCYS294
JGLN341
JGLU393
JPHE395
JHOH1332

site_idDC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE GOL J 2013
ChainResidue
JGLU477

site_idDC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL J 2014
ChainResidue
JASN162
JTYR163
JTRP170
JGLU260
JILE293
JCYS294
JSER295
JTRP459
JHOH1683

site_idDC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NA K 504
ChainResidue
KASN27
KASP99
KLEU189
KHOH1454

site_idDC7
Number of Residues21
DetailsBINDING SITE FOR RESIDUE NAD K 505
ChainResidue
KPRO160
KTRP161
KGLU188
KGLY218
KHIS219
KGLY222
KALA223
KGLY238
KSER239
KTHR242
KLYS245
KLEU261
KGLY262
KCYS294
KGLN341
KLYS344
KGLU393
KPHE395
KHOH746
KHOH1335
KHOH1446

site_idDC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL K 2016
ChainResidue
KASN162
KTYR163
KMET167
KILE293
KCYS294
KSER295
KTRP459
KHOH1451

site_idDC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL K 2018
ChainResidue
KASN412
KASN415
KASP416
KHOH1929
LLYS61
LGOL2005

site_idEC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL K 2019
ChainResidue
KGLU477
LGOL2000

site_idEC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NA L 504
ChainResidue
LASN27
LILE28
LASP99
LLEU189

site_idEC3
Number of Residues19
DetailsBINDING SITE FOR RESIDUE NAD L 505
ChainResidue
LPRO160
LTRP161
LGLU188
LGLY218
LHIS219
LGLY222
LALA223
LGLY238
LSER239
LTHR242
LLYS245
LILE246
LGLY262
LCYS294
LGLN341
LGLU393
LPHE395
LHOH1368
LHOH1445

site_idEC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL L 2000
ChainResidue
KGOL2019
LTRP474

site_idEC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL L 2005
ChainResidue
KGLU408
KILE411
KGOL2018
LARG60
LLYS61

site_idEC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL L 2008
ChainResidue
LASN162
LTYR163
LTRP170
LGLU260
LILE293
LCYS294
LSER295
LTRP459
LHOH1452

site_idEC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL L 2015
ChainResidue
LGLU319
LILE321
LILE323
LHIS368

site_idEC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL L 2017
ChainResidue
KALA241
LGLN252

Functional Information from PROSITE/UniProt
site_idPS00070
Number of Residues12
DetailsALDEHYDE_DEHYDR_CYS Aldehyde dehydrogenases cysteine active site. FfTNGQICSATS
ChainResidueDetails
APHE287-SER298

site_idPS00687
Number of Residues8
DetailsALDEHYDE_DEHYDR_GLU Aldehyde dehydrogenases glutamic acid active site. LELGGKSP
ChainResidueDetails
ALEU259-PRO266

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues12
DetailsACT_SITE: Proton acceptor => ECO:0000255|PROSITE-ProRule:PRU10007
ChainResidueDetails
AGLU260
JGLU260
KGLU260
LGLU260
BGLU260
CGLU260
DGLU260
EGLU260
FGLU260
GGLU260
HGLU260
IGLU260

site_idSWS_FT_FI2
Number of Residues12
DetailsACT_SITE: Nucleophile => ECO:0000255|PROSITE-ProRule:PRU10008
ChainResidueDetails
ACYS294
JCYS294
KCYS294
LCYS294
BCYS294
CCYS294
DCYS294
ECYS294
FCYS294
GCYS294
HCYS294
ICYS294

site_idSWS_FT_FI3
Number of Residues84
DetailsBINDING: BINDING => ECO:0000269|PubMed:20026072, ECO:0007744|PDB:3IWK
ChainResidueDetails
AASN27
BASP99
BLEU189
BGLY238
BCYS294
BGLU393
CASN27
CILE28
CASP99
CLEU189
CGLY238
AILE28
CCYS294
CGLU393
DASN27
DILE28
DASP99
DLEU189
DGLY238
DCYS294
DGLU393
EASN27
AASP99
EILE28
EASP99
ELEU189
EGLY238
ECYS294
EGLU393
FASN27
FILE28
FASP99
FLEU189
ALEU189
FGLY238
FCYS294
FGLU393
GASN27
GILE28
GASP99
GLEU189
GGLY238
GCYS294
GGLU393
AGLY238
HASN27
HILE28
HASP99
HLEU189
HGLY238
HCYS294
HGLU393
IASN27
IILE28
IASP99
ACYS294
ILEU189
IGLY238
ICYS294
IGLU393
JASN27
JILE28
JASP99
JLEU189
JGLY238
JCYS294
AGLU393
JGLU393
KASN27
KILE28
KASP99
KLEU189
KGLY238
KCYS294
KGLU393
LASN27
LILE28
BASN27
LASP99
LLEU189
LGLY238
LCYS294
LGLU393
BILE28

site_idSWS_FT_FI4
Number of Residues12
DetailsSITE: Transition state stabilizer => ECO:0000250|UniProtKB:P20000
ChainResidueDetails
AASN162
JASN162
KASN162
LASN162
BASN162
CASN162
DASN162
EASN162
FASN162
GASN162
HASN162
IASN162

223532

PDB entries from 2024-08-07

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