3ISG
Structure of the class D beta-lactamase OXA-1 in complex with doripenem
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0008658 | molecular_function | penicillin binding |
A | 0008800 | molecular_function | beta-lactamase activity |
A | 0016787 | molecular_function | hydrolase activity |
A | 0017001 | biological_process | antibiotic catabolic process |
A | 0046677 | biological_process | response to antibiotic |
B | 0008658 | molecular_function | penicillin binding |
B | 0008800 | molecular_function | beta-lactamase activity |
B | 0016787 | molecular_function | hydrolase activity |
B | 0017001 | biological_process | antibiotic catabolic process |
B | 0046677 | biological_process | response to antibiotic |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 15 |
Details | BINDING SITE FOR RESIDUE DRW A 300 |
Chain | Residue |
A | ASP66 |
A | GLY214 |
A | ALA215 |
A | LEU255 |
A | HOH306 |
A | HOH357 |
A | HOH370 |
A | SER67 |
A | KCX70 |
A | MET99 |
A | SER115 |
A | VAL117 |
A | LEU161 |
A | LYS212 |
A | THR213 |
site_id | AC2 |
Number of Residues | 17 |
Details | BINDING SITE FOR RESIDUE DRW B 300 |
Chain | Residue |
B | ASP66 |
B | SER67 |
B | KCX70 |
B | GLY98 |
B | MET99 |
B | SER115 |
B | VAL117 |
B | LEU161 |
B | LYS212 |
B | THR213 |
B | GLY214 |
B | ALA215 |
B | LEU255 |
B | SER258 |
B | HOH276 |
B | HOH345 |
B | HOH443 |
site_id | AC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE MPD B 400 |
Chain | Residue |
B | ILE82 |
B | GLU122 |
B | HOH347 |
Functional Information from PROSITE/UniProt
site_id | PS00337 |
Number of Residues | 11 |
Details | BETA_LACTAMASE_D Beta-lactamase class-D active site. PdSTFKIAlSL |
Chain | Residue | Details |
A | PRO65-LEU75 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | ACT_SITE: Acyl-ester intermediate |
Chain | Residue | Details |
A | SER67 | |
B | SER67 |
site_id | SWS_FT_FI2 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000250 |
Chain | Residue | Details |
A | LYS236 | |
B | LYS236 |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | MOD_RES: N6-carboxylysine => ECO:0000269|PubMed:12493831 |
Chain | Residue | Details |
A | KCX70 | |
B | KCX70 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1m6k |
Chain | Residue | Details |
A | SER67 |
site_id | CSA2 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1m6k |
Chain | Residue | Details |
B | SER67 |
site_id | MCSA1 |
Number of Residues | 6 |
Details | M-CSA 210 |
Chain | Residue | Details |
A | SER67 | covalently attached, nucleofuge, nucleophile, proton acceptor, proton donor |
A | KCX70 | proton acceptor, proton donor, proton relay |
A | SER115 | hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor, proton relay |
A | SER120 | electrostatic stabiliser, hydrogen bond donor |
A | TRP160 | electrostatic stabiliser, hydrogen bond donor |
A | ALA215 | electrostatic stabiliser, hydrogen bond donor |
site_id | MCSA2 |
Number of Residues | 6 |
Details | M-CSA 210 |
Chain | Residue | Details |
B | SER67 | covalently attached, nucleofuge, nucleophile, proton acceptor, proton donor |
B | KCX70 | proton acceptor, proton donor, proton relay |
B | SER115 | hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor, proton relay |
B | SER120 | electrostatic stabiliser, hydrogen bond donor |
B | TRP160 | electrostatic stabiliser, hydrogen bond donor |
B | ALA215 | electrostatic stabiliser, hydrogen bond donor |