3IN1
Crystal structure of a putative Ribokinase in complex with ADP from E.coli
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005829 | cellular_component | cytosol |
A | 0006974 | biological_process | DNA damage response |
A | 0008673 | molecular_function | 2-dehydro-3-deoxygluconokinase activity |
A | 0016301 | molecular_function | kinase activity |
A | 0016772 | molecular_function | transferase activity, transferring phosphorus-containing groups |
A | 0019200 | molecular_function | carbohydrate kinase activity |
A | 0019698 | biological_process | D-galacturonate catabolic process |
A | 0042803 | molecular_function | protein homodimerization activity |
A | 0042840 | biological_process | D-glucuronate catabolic process |
A | 0046835 | biological_process | carbohydrate phosphorylation |
B | 0005829 | cellular_component | cytosol |
B | 0006974 | biological_process | DNA damage response |
B | 0008673 | molecular_function | 2-dehydro-3-deoxygluconokinase activity |
B | 0016301 | molecular_function | kinase activity |
B | 0016772 | molecular_function | transferase activity, transferring phosphorus-containing groups |
B | 0019200 | molecular_function | carbohydrate kinase activity |
B | 0019698 | biological_process | D-galacturonate catabolic process |
B | 0042803 | molecular_function | protein homodimerization activity |
B | 0042840 | biological_process | D-glucuronate catabolic process |
B | 0046835 | biological_process | carbohydrate phosphorylation |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE ADP A 510 |
Chain | Residue |
A | ASN196 |
A | HOH394 |
A | NA411 |
A | HOH414 |
A | HOH417 |
A | LYS227 |
A | GLY229 |
A | LYS230 |
A | GLY232 |
A | ALA246 |
A | THR255 |
A | ASN284 |
A | ALA287 |
site_id | AC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE NA A 411 |
Chain | Residue |
A | THR255 |
A | ALA258 |
A | GLY259 |
A | ADP510 |
site_id | AC3 |
Number of Residues | 14 |
Details | BINDING SITE FOR RESIDUE ADP B 510 |
Chain | Residue |
B | ASN196 |
B | LYS227 |
B | GLY229 |
B | GLY232 |
B | ALA246 |
B | VAL247 |
B | ILE250 |
B | ALA252 |
B | THR255 |
B | ASN284 |
B | ALA287 |
B | HOH385 |
B | NA411 |
B | HOH421 |
site_id | AC4 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE NA B 411 |
Chain | Residue |
B | GLY259 |
B | ADP510 |
Functional Information from PROSITE/UniProt
site_id | PS00583 |
Number of Residues | 25 |
Details | PFKB_KINASES_1 pfkB family of carbohydrate kinases signature 1. GGdAiNEAtiIsRLGhrtalmsriG |
Chain | Residue | Details |
A | GLY41-GLY65 |
site_id | PS00584 |
Number of Residues | 14 |
Details | PFKB_KINASES_2 pfkB family of carbohydrate kinases signature 2. DTiGAGDnfaSGFI |
Chain | Residue | Details |
A | ASP254-ILE267 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1lio |
Chain | Residue | Details |
A | ASP260 | |
A | ARG108 |
site_id | CSA2 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1lio |
Chain | Residue | Details |
B | ASP260 | |
B | ARG108 |
site_id | CSA3 |
Number of Residues | 4 |
Details | Annotated By Reference To The Literature 1lio |
Chain | Residue | Details |
A | GLY259 | |
A | GLY257 | |
A | ALA258 | |
A | ASP260 |
site_id | CSA4 |
Number of Residues | 4 |
Details | Annotated By Reference To The Literature 1lio |
Chain | Residue | Details |
B | GLY259 | |
B | GLY257 | |
B | ALA258 | |
B | ASP260 |
site_id | CSA5 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1lio |
Chain | Residue | Details |
A | GLY257 | |
A | LYS227 |
site_id | CSA6 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1lio |
Chain | Residue | Details |
B | GLY257 | |
B | LYS227 |