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3IKE

Crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase from Burkholderia pseudomallei with cytosine

Functional Information from GO Data
ChainGOidnamespacecontents
A0008299biological_processisoprenoid biosynthetic process
A0008685molecular_function2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
A0016114biological_processterpenoid biosynthetic process
A0016829molecular_functionlyase activity
A0019288biological_processisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
A0046872molecular_functionmetal ion binding
B0008299biological_processisoprenoid biosynthetic process
B0008685molecular_function2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
B0016114biological_processterpenoid biosynthetic process
B0016829molecular_functionlyase activity
B0019288biological_processisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
B0046872molecular_functionmetal ion binding
C0008299biological_processisoprenoid biosynthetic process
C0008685molecular_function2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
C0016114biological_processterpenoid biosynthetic process
C0016829molecular_functionlyase activity
C0019288biological_processisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
C0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 201
ChainResidue
AASP10
AHIS12
AHIS44
BHOH212

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CYT A 901
ChainResidue
ALYS134
ATHR135
AALA102
APRO105
ALYS106
ALEU107
AALA108

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL A 163
ChainResidue
AGLN103
ATHR135
AASN136
ALYS138
AGLY143

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG B 163
ChainResidue
AHOH188
BHOH219
CHOH187

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CYT B 901
ChainResidue
BALA102
BPRO105
BLYS106
BLEU107
BALA108
BLYS134
BTHR135

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 201
ChainResidue
BASP10
BHIS12
BHIS44
CHOH186

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CYT C 901
ChainResidue
CALA102
CPRO105
CLYS106
CLEU107
CALA108
CLYS134

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN C 201
ChainResidue
CASP10
CHIS12
CHIS44
CHOH226

Functional Information from PROSITE/UniProt
site_idPS01350
Number of Residues16
DetailsISPF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. SDADVLlHAitDAlfG
ChainResidueDetails
ASER37-GLY52

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues34
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00107","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues32
DetailsBinding site: {}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues5
DetailsSite: {"description":"Transition state stabilizer","evidences":[{"source":"HAMAP-Rule","id":"MF_00107","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

238582

PDB entries from 2025-07-09

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