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3IEL

Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with UMP

Functional Information from GO Data
ChainGOidnamespacecontents
A0003723molecular_functionRNA binding
A0004518molecular_functionnuclease activity
A0004519molecular_functionendonuclease activity
A0004521molecular_functionRNA endonuclease activity
A0005737cellular_componentcytoplasm
A0006364biological_processrRNA processing
A0016787molecular_functionhydrolase activity
A0046872molecular_functionmetal ion binding
B0003723molecular_functionRNA binding
B0004518molecular_functionnuclease activity
B0004519molecular_functionendonuclease activity
B0004521molecular_functionRNA endonuclease activity
B0005737cellular_componentcytoplasm
B0006364biological_processrRNA processing
B0016787molecular_functionhydrolase activity
B0046872molecular_functionmetal ion binding
C0003723molecular_functionRNA binding
C0004518molecular_functionnuclease activity
C0004519molecular_functionendonuclease activity
C0004521molecular_functionRNA endonuclease activity
C0005737cellular_componentcytoplasm
C0006364biological_processrRNA processing
C0016787molecular_functionhydrolase activity
C0046872molecular_functionmetal ion binding
D0003723molecular_functionRNA binding
D0004518molecular_functionnuclease activity
D0004519molecular_functionendonuclease activity
D0004521molecular_functionRNA endonuclease activity
D0005737cellular_componentcytoplasm
D0006364biological_processrRNA processing
D0016787molecular_functionhydrolase activity
D0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 432
ChainResidue
AARG424
CARG73
CHOH493

site_idAC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 A 433
ChainResidue
AGLU153

site_idAC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 434
ChainResidue
ALYS99
AARG256

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 435
ChainResidue
AGLU199
AARG202
DSER330

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 436
ChainResidue
AARG198
AARG202
AHOH520

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 437
ChainResidue
ATHR222
APHE223
AALA224
ASER313
AGLY314

site_idAC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 438
ChainResidue
APRO304
AARG333

site_idAC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 439
ChainResidue
APRO243
AARG244

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 440
ChainResidue
APRO172
AASP173
ASER269
AGLU270
AHOH489
DARG84

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 441
ChainResidue
AARG24
ALEU129
AGLY130

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 442
ChainResidue
APHE47
AASP48
APRO49
AFLC464

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 443
ChainResidue
AARG359
AGLY362
AHOH523
CARG359

site_idBC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 444
ChainResidue
AARG359
CARG359
CGLU364

site_idBC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 445
ChainResidue
AARG73
AHOH561
CARG424

site_idBC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 446
ChainResidue
AGLN383
ALEU412

site_idBC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 447
ChainResidue
AHIS293
BARG284

site_idBC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 448
ChainResidue
AGLN34
ALEU62
AASP63

site_idBC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 A 449
ChainResidue
AGLY319

site_idCC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 A 450
ChainResidue
AARG354

site_idCC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 451
ChainResidue
AARG354
AALA369
ASER370
AVAL371
AHOH524
DGLY362
DSO4442

site_idCC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 452
ChainResidue
APRO366
AARG368

site_idCC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 453
ChainResidue
ALYS298
AASN301
AHIS323
ALYS326
AHIS327

site_idCC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 454
ChainResidue
AHIS238
AHIS240
AARG241
BPRO366
BARG368

site_idCC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 455
ChainResidue
AHIS293
ATHR294
AARG320

site_idCC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 456
ChainResidue
AMET1
AARG2
AGLU153

site_idCC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 457
ChainResidue
AARG192
AHOH587

site_idCC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 A 458
ChainResidue
AARG368

site_idDC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 459
ChainResidue
AARG77
AGLU113
AHIS117

site_idDC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 460
ChainResidue
AASN281
AHOH553

site_idDC3
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 A 461
ChainResidue
AARG24

site_idDC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 463
ChainResidue
AARG192
ATYR341
ALYS405
AU5P465

site_idDC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE FLC A 464
ChainResidue
CGLU74
AGLY46
ASO4442
CPRO44
CPHE45
CGLY46
CPHE47
CASP48
CPRO49

site_idDC6
Number of Residues14
DetailsBINDING SITE FOR RESIDUE U5P A 465
ChainResidue
AVAL12
ATHR188
ATYR189
AARG192
AARG227
AGLY340
ATYR341
ASER378
AGLY379
AHIS380
AGLU402
ALYS405
ASO4463
AHOH472

site_idDC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE U5P A 466
ChainResidue
AARG2
AVAL4
APHE6
ALEU20
AARG25
AGLY46
APHE47
AGLY426
AGLY428

site_idDC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE U5P A 467
ChainResidue
ALEU88
AGLU91
AARG263
AHOH579
DLEU277

site_idDC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 468
ChainResidue
AASP63
AHIS64
AASP162
AHIS400
AZN469

site_idEC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN A 469
ChainResidue
AHIS59
AHIS61
AHIS141
AASP162
AZN468
AHOH472

site_idEC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 432
ChainResidue
BPHE223
BALA224
BSER313
BGLY314
BHOH550

site_idEC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 433
ChainResidue
BLYS298
BASN301
BHIS323
BLYS326
BHIS327
BHOH473

site_idEC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 434
ChainResidue
BARG192
BPRO193
BHIS194
BARG195
BGLY375

site_idEC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 B 435
ChainResidue
BPRO304

site_idEC6
Number of Residues11
DetailsBINDING SITE FOR RESIDUE SO4 B 436
ChainResidue
ATYR248
AGLU289
AALA296
AHOH502
AHOH525
BTYR248
BGLU289
BVAL291
BALA296
BHOH491
BHOH518

site_idEC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 437
ChainResidue
BPRO243
BARG244

site_idEC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 438
ChainResidue
BTYR236
BHOH526

site_idEC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 439
ChainResidue
BGLY319
BSO4453

site_idFC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 440
ChainResidue
BLEU387
BLEU412
BARG416
BHOH517
BHOH520

site_idFC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 441
ChainResidue
BARG359
BGLY362

site_idFC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 442
ChainResidue
BARG84
BARG263
BHOH549

site_idFC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 443
ChainResidue
BARG24
BLEU129
BGLY130

site_idFC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 444
ChainResidue
BGLU292
BHIS293
BTHR294
BSO4449
BHOH521

site_idFC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 445
ChainResidue
BPRO172
BASP173
BSER269
BGLU270
BHOH487

site_idFC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 446
ChainResidue
BARG354
BSER370
BVAL371
BHOH541

site_idFC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 447
ChainResidue
BVAL371
BHIS372
BTHR373

site_idFC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 B 448
ChainResidue
BARG368

site_idGC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 449
ChainResidue
BARG320
BSO4444

site_idGC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 B 451
ChainResidue
BARG424

site_idGC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 452
ChainResidue
BMET1
BARG2
BLEU20

site_idGC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 453
ChainResidue
BHIS323
BSO4439
BHOH515

site_idGC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 454
ChainResidue
BPRO262
BASN281
BARG284

site_idGC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FLC B 455
ChainResidue
ALEU407
ALYS411
AHOH582
BLEU407
BLYS411

site_idGC7
Number of Residues14
DetailsBINDING SITE FOR RESIDUE U5P B 456
ChainResidue
BVAL12
BTHR188
BTYR189
BARG227
BGLY340
BTYR341
BSER378
BGLY379
BHIS380
BHIS400
BGLU402
BLYS405
BHOH462
BHOH500

site_idGC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE U5P B 457
ChainResidue
BARG2
BLEU20
BARG25
BGLY46
BPHE47
BGLY426
BGLY428

site_idGC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 458
ChainResidue
BASP63
BHIS64
BASP162
BHIS400
BHOH462

site_idHC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 459
ChainResidue
BHIS59
BHIS61
BHIS141
BASP162
BHOH462

site_idHC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 C 432
ChainResidue
AARG73
CARG424

site_idHC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 433
ChainResidue
CVAL290
CGLU292
CHIS293

site_idHC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 434
ChainResidue
CARG24
CLEU129
CGLY130

site_idHC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 C 435
ChainResidue
CTHR222
CPHE223
CALA224
CSER313
CGLY314

site_idHC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 C 436
ChainResidue
CHOH477

site_idHC7
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 C 437
ChainResidue
CARG302

site_idHC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 C 438
ChainResidue
CMET1
CARG2

site_idHC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 C 439
ChainResidue
CARG24
CLYS50

site_idIC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 440
ChainResidue
CARG25
CPHE47
CASP48

site_idIC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 C 441
ChainResidue
CARG84

site_idIC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 442
ChainResidue
AARG359
CARG359
CGLY362

site_idIC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 C 443
ChainResidue
CGLY426
CGLY428

site_idIC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 C 444
ChainResidue
CARG155

site_idIC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 C 445
ChainResidue
CPRO172
CASP173
CSER269
CGLU270

site_idIC7
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 C 446
ChainResidue
CARG368

site_idIC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 C 447
ChainResidue
CGLN344
CGLY345

site_idIC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 C 448
ChainResidue
CARG77
CHIS117

site_idJC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 C 449
ChainResidue
CHIS240

site_idJC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 450
ChainResidue
CARG2
CARG25
CHOH492

site_idJC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 C 451
ChainResidue
CARG84
CLEU88
CARG263
CHOH462

site_idJC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 C 452
ChainResidue
CLYS411

site_idJC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 453
ChainResidue
CLYS298
CHIS323
CHIS327

site_idJC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 454
ChainResidue
CSER330
CPRO366
CARG368

site_idJC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 455
ChainResidue
CARG10
CARG424
CHOH499

site_idJC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 C 456
ChainResidue
CHIS327
DLYS411

site_idJC9
Number of Residues13
DetailsBINDING SITE FOR RESIDUE U5P C 457
ChainResidue
CVAL12
CTHR188
CTYR189
CARG227
CGLY340
CTYR341
CSER378
CGLY379
CHIS380
CHIS400
CGLU402
CLYS405
CHOH479

site_idKC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN C 458
ChainResidue
CASP63
CHIS64
CASP162
CHIS400
CZN459

site_idKC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN C 459
ChainResidue
CHIS59
CHIS61
CHIS141
CASP162
CZN458
CHOH479

site_idKC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 D 432
ChainResidue
DARG192
DPRO193
DHIS194
DARG195
DGLY375

site_idKC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 D 433
ChainResidue
DTYR236

site_idKC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 D 434
ChainResidue
DARG24

site_idKC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 D 435
ChainResidue
DPRO172
DASP173
DSER269
DGLU270

site_idKC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 D 436
ChainResidue
DGLY426
DGLY428

site_idKC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 D 437
ChainResidue
DARG119
DPRO120

site_idKC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 D 438
ChainResidue
DARG155

site_idLC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 D 439
ChainResidue
DARG77
DHIS117

site_idLC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 D 440
ChainResidue
DARG263

site_idLC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 D 441
ChainResidue
AARG195
DLYS298
DASN301
DHIS323
DHIS327
DHOH464

site_idLC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 D 442
ChainResidue
ASER370
AHIS372
ASO4451
DGLY362

site_idLC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 D 443
ChainResidue
DLYS99

site_idLC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 D 444
ChainResidue
DARG24
DLEU129
DGLY130

site_idLC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 D 445
ChainResidue
DTHR222
DPHE223
DALA224
DMET253
DGLY314

site_idLC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 D 446
ChainResidue
DVAL290
DGLU292

site_idLC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 D 447
ChainResidue
DARG354

site_idMC1
Number of Residues14
DetailsBINDING SITE FOR RESIDUE U5P D 448
ChainResidue
DVAL12
DTHR188
DTYR189
DARG227
DGLY340
DTYR341
DSER378
DGLY379
DHIS380
DHIS400
DGLU402
DLYS405
DHOH452
DHOH462

site_idMC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN D 449
ChainResidue
DASP63
DHIS64
DASP162
DHIS400
DZN450
DHOH452

site_idMC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN D 450
ChainResidue
DHIS59
DHIS61
DHIS141
DASP162
DZN449
DHOH452

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues28
DetailsBinding site: {}
ChainResidueDetails

243531

PDB entries from 2025-10-22

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