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3IEL

Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with UMP

Functional Information from GO Data
ChainGOidnamespacecontents
A0003723molecular_functionRNA binding
A0004519molecular_functionendonuclease activity
A0004521molecular_functionRNA endonuclease activity
A0005737cellular_componentcytoplasm
A0006364biological_processrRNA processing
A0046872molecular_functionmetal ion binding
B0003723molecular_functionRNA binding
B0004519molecular_functionendonuclease activity
B0004521molecular_functionRNA endonuclease activity
B0005737cellular_componentcytoplasm
B0006364biological_processrRNA processing
B0046872molecular_functionmetal ion binding
C0003723molecular_functionRNA binding
C0004519molecular_functionendonuclease activity
C0004521molecular_functionRNA endonuclease activity
C0005737cellular_componentcytoplasm
C0006364biological_processrRNA processing
C0046872molecular_functionmetal ion binding
D0003723molecular_functionRNA binding
D0004519molecular_functionendonuclease activity
D0004521molecular_functionRNA endonuclease activity
D0005737cellular_componentcytoplasm
D0006364biological_processrRNA processing
D0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 432
ChainResidue
AARG424
CARG73
CHOH493

site_idAC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 A 433
ChainResidue
AGLU153

site_idAC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 434
ChainResidue
ALYS99
AARG256

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 435
ChainResidue
AGLU199
AARG202
DSER330

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 436
ChainResidue
AARG198
AARG202
AHOH520

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 437
ChainResidue
ATHR222
APHE223
AALA224
ASER313
AGLY314

site_idAC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 438
ChainResidue
APRO304
AARG333

site_idAC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 439
ChainResidue
APRO243
AARG244

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 440
ChainResidue
APRO172
AASP173
ASER269
AGLU270
AHOH489
DARG84

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 441
ChainResidue
AARG24
ALEU129
AGLY130

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 442
ChainResidue
APHE47
AASP48
APRO49
AFLC464

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 443
ChainResidue
AARG359
AGLY362
AHOH523
CARG359

site_idBC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 444
ChainResidue
AARG359
CARG359
CGLU364

site_idBC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 445
ChainResidue
AARG73
AHOH561
CARG424

site_idBC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 446
ChainResidue
AGLN383
ALEU412

site_idBC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 447
ChainResidue
AHIS293
BARG284

site_idBC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 448
ChainResidue
AGLN34
ALEU62
AASP63

site_idBC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 A 449
ChainResidue
AGLY319

site_idCC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 A 450
ChainResidue
AARG354

site_idCC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 451
ChainResidue
AARG354
AALA369
ASER370
AVAL371
AHOH524
DGLY362
DSO4442

site_idCC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 452
ChainResidue
APRO366
AARG368

site_idCC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 453
ChainResidue
ALYS298
AASN301
AHIS323
ALYS326
AHIS327

site_idCC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 454
ChainResidue
AHIS238
AHIS240
AARG241
BPRO366
BARG368

site_idCC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 455
ChainResidue
AHIS293
ATHR294
AARG320

site_idCC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 456
ChainResidue
AMET1
AARG2
AGLU153

site_idCC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 457
ChainResidue
AARG192
AHOH587

site_idCC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 A 458
ChainResidue
AARG368

site_idDC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 459
ChainResidue
AARG77
AGLU113
AHIS117

site_idDC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 460
ChainResidue
AASN281
AHOH553

site_idDC3
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 A 461
ChainResidue
AARG24

site_idDC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 463
ChainResidue
AARG192
ATYR341
ALYS405
AU5P465

site_idDC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE FLC A 464
ChainResidue
CGLU74
AGLY46
ASO4442
CPRO44
CPHE45
CGLY46
CPHE47
CASP48
CPRO49

site_idDC6
Number of Residues14
DetailsBINDING SITE FOR RESIDUE U5P A 465
ChainResidue
AVAL12
ATHR188
ATYR189
AARG192
AARG227
AGLY340
ATYR341
ASER378
AGLY379
AHIS380
AGLU402
ALYS405
ASO4463
AHOH472

site_idDC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE U5P A 466
ChainResidue
AARG2
AVAL4
APHE6
ALEU20
AARG25
AGLY46
APHE47
AGLY426
AGLY428

site_idDC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE U5P A 467
ChainResidue
ALEU88
AGLU91
AARG263
AHOH579
DLEU277

site_idDC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 468
ChainResidue
AASP63
AHIS64
AASP162
AHIS400
AZN469

site_idEC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN A 469
ChainResidue
AHIS59
AHIS61
AHIS141
AASP162
AZN468
AHOH472

site_idEC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 432
ChainResidue
BPHE223
BALA224
BSER313
BGLY314
BHOH550

site_idEC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 433
ChainResidue
BLYS298
BASN301
BHIS323
BLYS326
BHIS327
BHOH473

site_idEC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 434
ChainResidue
BARG192
BPRO193
BHIS194
BARG195
BGLY375

site_idEC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 B 435
ChainResidue
BPRO304

site_idEC6
Number of Residues11
DetailsBINDING SITE FOR RESIDUE SO4 B 436
ChainResidue
ATYR248
AGLU289
AALA296
AHOH502
AHOH525
BTYR248
BGLU289
BVAL291
BALA296
BHOH491
BHOH518

site_idEC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 437
ChainResidue
BPRO243
BARG244

site_idEC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 438
ChainResidue
BTYR236
BHOH526

site_idEC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 439
ChainResidue
BGLY319
BSO4453

site_idFC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 440
ChainResidue
BLEU387
BLEU412
BARG416
BHOH517
BHOH520

site_idFC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 441
ChainResidue
BARG359
BGLY362

site_idFC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 442
ChainResidue
BARG84
BARG263
BHOH549

site_idFC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 443
ChainResidue
BARG24
BLEU129
BGLY130

site_idFC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 444
ChainResidue
BGLU292
BHIS293
BTHR294
BSO4449
BHOH521

site_idFC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 445
ChainResidue
BPRO172
BASP173
BSER269
BGLU270
BHOH487

site_idFC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 446
ChainResidue
BARG354
BSER370
BVAL371
BHOH541

site_idFC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 447
ChainResidue
BVAL371
BHIS372
BTHR373

site_idFC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 B 448
ChainResidue
BARG368

site_idGC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 449
ChainResidue
BARG320
BSO4444

site_idGC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 B 451
ChainResidue
BARG424

site_idGC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 452
ChainResidue
BMET1
BARG2
BLEU20

site_idGC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 453
ChainResidue
BHIS323
BSO4439
BHOH515

site_idGC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 454
ChainResidue
BPRO262
BASN281
BARG284

site_idGC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FLC B 455
ChainResidue
ALEU407
ALYS411
AHOH582
BLEU407
BLYS411

site_idGC7
Number of Residues14
DetailsBINDING SITE FOR RESIDUE U5P B 456
ChainResidue
BVAL12
BTHR188
BTYR189
BARG227
BGLY340
BTYR341
BSER378
BGLY379
BHIS380
BHIS400
BGLU402
BLYS405
BHOH462
BHOH500

site_idGC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE U5P B 457
ChainResidue
BARG2
BLEU20
BARG25
BGLY46
BPHE47
BGLY426
BGLY428

site_idGC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 458
ChainResidue
BASP63
BHIS64
BASP162
BHIS400
BHOH462

site_idHC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 459
ChainResidue
BHIS59
BHIS61
BHIS141
BASP162
BHOH462

site_idHC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 C 432
ChainResidue
AARG73
CARG424

site_idHC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 433
ChainResidue
CVAL290
CGLU292
CHIS293

site_idHC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 434
ChainResidue
CARG24
CLEU129
CGLY130

site_idHC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 C 435
ChainResidue
CTHR222
CPHE223
CALA224
CSER313
CGLY314

site_idHC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 C 436
ChainResidue
CHOH477

site_idHC7
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 C 437
ChainResidue
CARG302

site_idHC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 C 438
ChainResidue
CMET1
CARG2

site_idHC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 C 439
ChainResidue
CARG24
CLYS50

site_idIC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 440
ChainResidue
CARG25
CPHE47
CASP48

site_idIC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 C 441
ChainResidue
CARG84

site_idIC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 442
ChainResidue
AARG359
CARG359
CGLY362

site_idIC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 C 443
ChainResidue
CGLY426
CGLY428

site_idIC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 C 444
ChainResidue
CARG155

site_idIC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 C 445
ChainResidue
CPRO172
CASP173
CSER269
CGLU270

site_idIC7
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 C 446
ChainResidue
CARG368

site_idIC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 C 447
ChainResidue
CGLN344
CGLY345

site_idIC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 C 448
ChainResidue
CARG77
CHIS117

site_idJC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 C 449
ChainResidue
CHIS240

site_idJC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 450
ChainResidue
CARG2
CARG25
CHOH492

site_idJC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 C 451
ChainResidue
CARG84
CLEU88
CARG263
CHOH462

site_idJC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 C 452
ChainResidue
CLYS411

site_idJC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 453
ChainResidue
CLYS298
CHIS323
CHIS327

site_idJC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 454
ChainResidue
CSER330
CPRO366
CARG368

site_idJC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 455
ChainResidue
CARG10
CARG424
CHOH499

site_idJC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 C 456
ChainResidue
CHIS327
DLYS411

site_idJC9
Number of Residues13
DetailsBINDING SITE FOR RESIDUE U5P C 457
ChainResidue
CVAL12
CTHR188
CTYR189
CARG227
CGLY340
CTYR341
CSER378
CGLY379
CHIS380
CHIS400
CGLU402
CLYS405
CHOH479

site_idKC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN C 458
ChainResidue
CASP63
CHIS64
CASP162
CHIS400
CZN459

site_idKC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN C 459
ChainResidue
CHIS59
CHIS61
CHIS141
CASP162
CZN458
CHOH479

site_idKC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 D 432
ChainResidue
DARG192
DPRO193
DHIS194
DARG195
DGLY375

site_idKC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 D 433
ChainResidue
DTYR236

site_idKC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 D 434
ChainResidue
DARG24

site_idKC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 D 435
ChainResidue
DPRO172
DASP173
DSER269
DGLU270

site_idKC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 D 436
ChainResidue
DGLY426
DGLY428

site_idKC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 D 437
ChainResidue
DARG119
DPRO120

site_idKC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 D 438
ChainResidue
DARG155

site_idLC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 D 439
ChainResidue
DARG77
DHIS117

site_idLC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 D 440
ChainResidue
DARG263

site_idLC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 D 441
ChainResidue
AARG195
DLYS298
DASN301
DHIS323
DHIS327
DHOH464

site_idLC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 D 442
ChainResidue
ASER370
AHIS372
ASO4451
DGLY362

site_idLC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 D 443
ChainResidue
DLYS99

site_idLC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 D 444
ChainResidue
DARG24
DLEU129
DGLY130

site_idLC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 D 445
ChainResidue
DTHR222
DPHE223
DALA224
DMET253
DGLY314

site_idLC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 D 446
ChainResidue
DVAL290
DGLU292

site_idLC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 D 447
ChainResidue
DARG354

site_idMC1
Number of Residues14
DetailsBINDING SITE FOR RESIDUE U5P D 448
ChainResidue
DVAL12
DTHR188
DTYR189
DARG227
DGLY340
DTYR341
DSER378
DGLY379
DHIS380
DHIS400
DGLU402
DLYS405
DHOH452
DHOH462

site_idMC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN D 449
ChainResidue
DASP63
DHIS64
DASP162
DHIS400
DZN450
DHOH452

site_idMC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN D 450
ChainResidue
DHIS59
DHIS61
DHIS141
DASP162
DZN449
DHOH452

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues28
DetailsBINDING:
ChainResidueDetails
AHIS59
BASP63
BHIS64
BHIS141
BASP162
BHIS400
CHIS59
CHIS61
CASP63
CHIS64
CHIS141
AHIS61
CASP162
CHIS400
DHIS59
DHIS61
DASP63
DHIS64
DHIS141
DASP162
DHIS400
AASP63
AHIS64
AHIS141
AASP162
AHIS400
BHIS59
BHIS61

222624

PDB entries from 2024-07-17

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