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3IEK

Crystal Structure of native TTHA0252 from Thermus thermophilus HB8

Functional Information from GO Data
ChainGOidnamespacecontents
A0003723molecular_functionRNA binding
A0004519molecular_functionendonuclease activity
A0004521molecular_functionRNA endonuclease activity
A0005737cellular_componentcytoplasm
A0006364biological_processrRNA processing
A0016180biological_processsnRNA processing
A0046872molecular_functionmetal ion binding
B0003723molecular_functionRNA binding
B0004519molecular_functionendonuclease activity
B0004521molecular_functionRNA endonuclease activity
B0005737cellular_componentcytoplasm
B0006364biological_processrRNA processing
B0016180biological_processsnRNA processing
B0046872molecular_functionmetal ion binding
C0003723molecular_functionRNA binding
C0004519molecular_functionendonuclease activity
C0004521molecular_functionRNA endonuclease activity
C0005737cellular_componentcytoplasm
C0006364biological_processrRNA processing
C0016180biological_processsnRNA processing
C0046872molecular_functionmetal ion binding
D0003723molecular_functionRNA binding
D0004519molecular_functionendonuclease activity
D0004521molecular_functionRNA endonuclease activity
D0005737cellular_componentcytoplasm
D0006364biological_processrRNA processing
D0016180biological_processsnRNA processing
D0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 432
ChainResidue
AARG77
AHOH475

site_idAC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 A 433
ChainResidue
AARG24

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 434
ChainResidue
AARG359
CARG359
CGLU364

site_idAC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 A 435
ChainResidue
AARG368

site_idAC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 436
ChainResidue
AARG73
AHOH492

site_idAC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 A 437
ChainResidue
AHIS61
AASP63
AHIS141
AASP162
AHIS380
AHIS400
AZN461
AZN462

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 438
ChainResidue
AGLU199
AARG202
DSER330

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 439
ChainResidue
ASER330
APRO366
AARG368

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 440
ChainResidue
AVAL371
AHIS372
ATHR373
AHOH553

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 441
ChainResidue
AARG24
ALEU129
AGLY130

site_idBC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 442
ChainResidue
AMET1
AARG2
AHOH539

site_idBC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 A 443
ChainResidue
AHIS61
ALEU142
APHE223
AVAL225
AGLU226
AARG227
AHOH593
AHOH649
AHOH676

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 444
ChainResidue
AARG77
AGLU113
AHIS117
AHOH475

site_idBC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 445
ChainResidue
ATHR294
AARG320
AHOH694

site_idBC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 446
ChainResidue
APRO243
AARG244
BARG302

site_idBC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 447
ChainResidue
ATHR222
APHE223
ASER313
AGLY314
AHOH574
AHOH629

site_idBC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 448
ChainResidue
AARG359
AGLY362
AHOH665

site_idBC9
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 A 449
ChainResidue
ATYR189
AARG227
AGLY340
ATYR341
ASER378
AGLY379
AHOH642
AHOH648

site_idCC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 450
ChainResidue
AALA131
DLEU179

site_idCC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 451
ChainResidue
AARG84
APRO120
AGLU122
AARG266
DGLU270
DSO4432

site_idCC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 452
ChainResidue
AARG2
AGLY428
AHOH547

site_idCC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 A 453
ChainResidue
AARG119

site_idCC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 454
ChainResidue
AARG84
ALEU88
AARG263

site_idCC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 455
ChainResidue
ALYS298
AHIS323
ALYS326
AHIS327
AHOH664

site_idCC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 456
ChainResidue
AHIS293
BARG284

site_idCC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 457
ChainResidue
AHIS238
AHIS240
AARG241
BARG368

site_idCC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 458
ChainResidue
AHOH532
AHOH637
DARG84
APRO172
AASP173
ASER269
AGLU270

site_idDC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 459
ChainResidue
APRO304
AARG333
AHOH586
AHOH647

site_idDC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FLC A 460
ChainResidue
APRO262
AASN281
AARG284
AHOH599

site_idDC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN A 461
ChainResidue
AASP63
AHIS64
AASP162
AHIS400
ASO4437
AZN462

site_idDC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN A 462
ChainResidue
AHIS59
AHIS61
AHIS141
AASP162
ASO4437
AZN461

site_idDC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 432
ChainResidue
BARG24
BLEU129
BGLY130

site_idDC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 433
ChainResidue
APRO394
BARG2
BPRO430

site_idDC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 434
ChainResidue
BARG84
BARG263
BHOH574
BHOH580

site_idDC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 435
ChainResidue
BVAL371
BHIS372
BTHR373
BHOH505

site_idDC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 436
ChainResidue
BLYS210
BSER370
BHIS372
BSO4455

site_idEC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 437
ChainResidue
BGLY318
BGLY319
BHOH564
BHOH650

site_idEC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 438
ChainResidue
AHIS240
AARG241
BHIS327
BSER330

site_idEC3
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 B 439
ChainResidue
BARG256

site_idEC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 440
ChainResidue
BGLU402
BGLU403
BGLU404
BHOH533

site_idEC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 441
ChainResidue
BPRO243
BARG244

site_idEC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 442
ChainResidue
BARG25
BASP48

site_idEC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 443
ChainResidue
BPRO172
BASP173
BSER269
BGLU270

site_idEC8
Number of Residues11
DetailsBINDING SITE FOR RESIDUE SO4 B 444
ChainResidue
ATYR248
AGLU289
AALA296
AHOH515
AHOH603
BTYR248
BGLU289
BVAL291
BALA296
BHOH466
BHOH527

site_idEC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 B 445
ChainResidue
BARG24

site_idFC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 B 446
ChainResidue
BHIS61
BLEU142
BPHE223
BVAL225
BGLU226
BARG227
BHOH566
BHOH590
BHOH647

site_idFC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 B 447
ChainResidue
BGLU153

site_idFC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 448
ChainResidue
BARG77
BGLU113
BHIS117

site_idFC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 449
ChainResidue
BLEU412
BHOH522
BHOH656

site_idFC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 B 450
ChainResidue
BPRO304

site_idFC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 451
ChainResidue
BARG359
BLEU361
BGLY362
BHOH578

site_idFC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 452
ChainResidue
AARG244
BHIS323
BLYS326
BHIS327
BHOH624

site_idFC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 453
ChainResidue
BMET1
BARG2

site_idFC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 454
ChainResidue
BALA9
BARG10
BARG424
BPHE425
BHOH601

site_idGC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 455
ChainResidue
BARG354
BALA369
BSER370
BVAL371
BSO4436

site_idGC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 B 456
ChainResidue
BTYR189
BARG227
BGLY340
BTYR341
BSER378
BGLY379
BHOH568

site_idGC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 457
ChainResidue
BPHE223
BGLY312
BSER313
BGLY314
BHOH632

site_idGC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 458
ChainResidue
BGLU199
BARG202

site_idGC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 B 459
ChainResidue
BHIS61
BASP63
BHIS141
BASP162
BHIS380
BHIS400
BZN464
BZN465

site_idGC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 460
ChainResidue
AARG155
BARG155
BHOH555

site_idGC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 461
ChainResidue
BARG2
BGLY426
BGLY428
BHOH630

site_idGC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 462
ChainResidue
AARG155
BARG155
BHOH584

site_idGC9
Number of Residues9
DetailsBINDING SITE FOR RESIDUE FLC B 463
ChainResidue
ALEU407
AGLY410
ALYS411
AALA414
BLEU407
BGLY410
BLYS411
BVAL420
BHOH598

site_idHC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN B 464
ChainResidue
BASP63
BHIS64
BASP162
BHIS400
BSO4459
BZN465

site_idHC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN B 465
ChainResidue
BHIS59
BHIS61
BHIS141
BASP162
BSO4459
BZN464

site_idHC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 C 432
ChainResidue
CASP96
CVAL100
CPRO252
CMET253
CARG256

site_idHC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 C 433
ChainResidue
CARG24
CLEU129
CGLY130
CHOH466

site_idHC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 C 434
ChainResidue
CHIS61
CLEU142
CPHE223
CVAL225
CGLU226
CARG227
CHOH477

site_idHC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 C 435
ChainResidue
AARG73
CARG424

site_idHC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 C 436
ChainResidue
CARG2
CPRO430

site_idHC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 437
ChainResidue
CVAL371
CHIS372
CTHR373

site_idHC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 C 438
ChainResidue
CPHE47
CASP48
CHOH486
CHOH539

site_idIC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 C 439
ChainResidue
CARG24
CHOH485

site_idIC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 C 440
ChainResidue
CARG302

site_idIC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 C 441
ChainResidue
CGLU292
CHIS293

site_idIC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 C 442
ChainResidue
CPRO172
CASP173
CSER269
CGLU270

site_idIC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 443
ChainResidue
CARG84
CARG263
CHOH489

site_idIC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 C 444
ChainResidue
CARG155

site_idIC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 C 445
ChainResidue
CLYS298
CASN301
CHIS323
CHIS327

site_idIC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 C 446
ChainResidue
CLYS36

site_idIC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 447
ChainResidue
CARG2
CGLY426
CGLY428

site_idJC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 C 448
ChainResidue
BTRP126
BVAL149
BGLN151
BTHR156
CTRP126
CVAL149
CGLN151
CHOH482
CHOH498

site_idJC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 C 449
ChainResidue
CTYR189
CARG227
CGLY340
CTYR341
CSER378
CGLY379
CHOH515

site_idJC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 C 450
ChainResidue
AGLY46
APHE47
AHOH675
CGLY46
CPHE47
CSO4454

site_idJC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 C 451
ChainResidue
CARG77
CHOH565

site_idJC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 452
ChainResidue
CGLU113
CHIS117
CHOH565

site_idJC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 453
ChainResidue
CSER330
CPRO366
CARG368

site_idJC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 C 454
ChainResidue
CPRO44
CPHE45
CGLY46
CPHE47
CGLU74
CSO4450

site_idJC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN C 455
ChainResidue
CASP63
CHIS64
CASP162
CHIS400
CZN456

site_idJC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN C 456
ChainResidue
CHIS59
CHIS61
CHIS141
CASP162
CZN455

site_idKC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 D 432
ChainResidue
ASO4451
DPRO172
DASP173
DSER269
DGLU270
DHOH491

site_idKC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 D 433
ChainResidue
DARG119
DPRO120

site_idKC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 D 434
ChainResidue
DARG77
DGLU113

site_idKC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 D 435
ChainResidue
DMET1
DARG2

site_idKC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 D 436
ChainResidue
DARG24

site_idKC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 D 437
ChainResidue
DPRO44
DPHE45
DGLY46
DGLY46
DPHE47
DPRO49
DGLU74
DHOH485

site_idKC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 D 438
ChainResidue
DARG24
DLEU129
DGLY130

site_idKC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 D 439
ChainResidue
DGLU292
DHIS293
DALA296

site_idKC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 D 440
ChainResidue
DHIS372
DTHR373

site_idLC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 D 441
ChainResidue
DHIS61
DASP63
DASP162
DHIS380
DHIS400
DZN450
DZN451

site_idLC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 D 442
ChainResidue
CHIS327
DLYS411

site_idLC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 D 443
ChainResidue
DTYR189
DARG227
DGLY340
DTYR341
DSER378
DGLY379

site_idLC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 D 444
ChainResidue
DLYS298
DASN301
DHIS323
DHIS327

site_idLC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 D 445
ChainResidue
DASN281

site_idLC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 D 446
ChainResidue
DARG2
DGLU427
DGLY428

site_idLC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 D 447
ChainResidue
DHIS61
DLEU142
DPHE223
DVAL225
DGLU226
DARG227

site_idLC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 D 448
ChainResidue
DARG77
DGLU113
DHIS117

site_idLC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 D 449
ChainResidue
DARG155

site_idMC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN D 450
ChainResidue
DASP63
DHIS64
DASP162
DHIS400
DSO4441
DZN451

site_idMC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN D 451
ChainResidue
DHIS59
DHIS61
DHIS141
DASP162
DSO4441
DZN450

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues28
DetailsBINDING:
ChainResidueDetails
AHIS59
AHIS61
BASP162
BHIS400
CHIS59
CHIS61
CASP63
CHIS64
CHIS141
CASP162
CHIS400
DHIS59
DHIS61
DASP63
DHIS64
DHIS141
DASP162
DHIS400
AASP63
AHIS64
AHIS141
AASP162
AHIS400
BHIS59
BHIS61
BASP63
BHIS64
BHIS141

221051

PDB entries from 2024-06-12

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