3IEB
Crystal structure of 3-keto-L-gulonate-6-phosphate decarboxylase from Vibrio cholerae O1 biovar El Tor str. N16961
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004590 | molecular_function | orotidine-5'-phosphate decarboxylase activity |
A | 0006207 | biological_process | 'de novo' pyrimidine nucleobase biosynthetic process |
A | 0016829 | molecular_function | lyase activity |
A | 0019854 | biological_process | L-ascorbic acid catabolic process |
A | 0033982 | molecular_function | 3-dehydro-L-gulonate-6-phosphate decarboxylase activity |
A | 0046872 | molecular_function | metal ion binding |
B | 0004590 | molecular_function | orotidine-5'-phosphate decarboxylase activity |
B | 0006207 | biological_process | 'de novo' pyrimidine nucleobase biosynthetic process |
B | 0016829 | molecular_function | lyase activity |
B | 0019854 | biological_process | L-ascorbic acid catabolic process |
B | 0033982 | molecular_function | 3-dehydro-L-gulonate-6-phosphate decarboxylase activity |
B | 0046872 | molecular_function | metal ion binding |
C | 0004590 | molecular_function | orotidine-5'-phosphate decarboxylase activity |
C | 0006207 | biological_process | 'de novo' pyrimidine nucleobase biosynthetic process |
C | 0016829 | molecular_function | lyase activity |
C | 0019854 | biological_process | L-ascorbic acid catabolic process |
C | 0033982 | molecular_function | 3-dehydro-L-gulonate-6-phosphate decarboxylase activity |
C | 0046872 | molecular_function | metal ion binding |
D | 0004590 | molecular_function | orotidine-5'-phosphate decarboxylase activity |
D | 0006207 | biological_process | 'de novo' pyrimidine nucleobase biosynthetic process |
D | 0016829 | molecular_function | lyase activity |
D | 0019854 | biological_process | L-ascorbic acid catabolic process |
D | 0033982 | molecular_function | 3-dehydro-L-gulonate-6-phosphate decarboxylase activity |
D | 0046872 | molecular_function | metal ion binding |
E | 0004590 | molecular_function | orotidine-5'-phosphate decarboxylase activity |
E | 0006207 | biological_process | 'de novo' pyrimidine nucleobase biosynthetic process |
E | 0016829 | molecular_function | lyase activity |
E | 0019854 | biological_process | L-ascorbic acid catabolic process |
E | 0033982 | molecular_function | 3-dehydro-L-gulonate-6-phosphate decarboxylase activity |
E | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE SO4 A 1001 |
Chain | Residue |
A | ASP67 |
B | ARG139 |
A | GLY68 |
A | GLY69 |
A | ALA70 |
A | THR94 |
A | ALA97 |
A | HOH223 |
A | HOH544 |
A | HOH547 |
site_id | AC2 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL A 2001 |
Chain | Residue |
A | ALA88 |
A | ALA90 |
A | HIS91 |
A | ILE92 |
A | ILE95 |
A | TRP125 |
A | HOH625 |
site_id | AC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE SO4 A 216 |
Chain | Residue |
A | ALA26 |
A | ASN53 |
A | HIS54 |
A | PRO55 |
A | ASN56 |
A | HIS57 |
site_id | AC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 A 217 |
Chain | Residue |
A | GLY170 |
A | GLY171 |
A | HOH633 |
site_id | AC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 B 1002 |
Chain | Residue |
B | HIS54 |
B | PRO55 |
B | ASN56 |
B | HIS57 |
site_id | AC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL B 2001 |
Chain | Residue |
B | GLN12 |
B | THR13 |
B | ARG192 |
B | HOH373 |
B | HOH634 |
site_id | AC7 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL B 2002 |
Chain | Residue |
B | ALA88 |
B | ALA90 |
B | HIS91 |
B | ILE92 |
B | ASP121 |
B | TRP125 |
site_id | AC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL B 2003 |
Chain | Residue |
B | ILE113 |
B | TRP117 |
B | TYR135 |
B | HIS136 |
B | ARG137 |
B | HOH472 |
site_id | AC9 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE SO4 B 216 |
Chain | Residue |
A | ARG139 |
B | ASP67 |
B | GLY68 |
B | GLY69 |
B | ALA70 |
B | THR94 |
B | ALA97 |
B | HOH649 |
site_id | BC1 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 B 217 |
Chain | Residue |
B | GLY170 |
B | GLY171 |
B | ALA190 |
B | GLY191 |
B | HOH223 |
site_id | BC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL C 2001 |
Chain | Residue |
C | ALA88 |
C | ALA90 |
C | HIS91 |
C | ILE92 |
C | TRP125 |
C | HOH287 |
site_id | BC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL C 2002 |
Chain | Residue |
C | ILE113 |
C | TYR135 |
C | HIS136 |
C | SER138 |
C | HOH246 |
C | HOH482 |
site_id | BC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE SO4 C 216 |
Chain | Residue |
C | HIS54 |
C | PRO55 |
C | ASN56 |
C | HIS57 |
C | HOH688 |
C | HOH689 |
site_id | BC5 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE SO4 C 217 |
Chain | Residue |
C | ASP67 |
C | GLY68 |
C | GLY69 |
C | ALA70 |
C | ALA93 |
C | THR94 |
C | ALA97 |
C | HOH271 |
C | HOH390 |
C | HOH523 |
E | ARG139 |
site_id | BC6 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE SO4 C 218 |
Chain | Residue |
C | GLY170 |
C | GLY171 |
C | GLY191 |
C | HOH228 |
C | HOH303 |
C | HOH467 |
C | HOH681 |
site_id | BC7 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE SO4 C 219 |
Chain | Residue |
C | ARG192 |
C | HOH288 |
site_id | BC8 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE GOL D 2001 |
Chain | Residue |
D | ASN56 |
D | HIS57 |
D | ASP82 |
D | ARG51 |
site_id | BC9 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL D 2003 |
Chain | Residue |
D | ALA88 |
D | ALA89 |
D | ALA90 |
D | ILE95 |
D | TRP125 |
D | HOH587 |
D | HOH760 |
site_id | CC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 D 216 |
Chain | Residue |
D | GLY191 |
D | ARG192 |
D | HOH301 |
site_id | CC2 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE SO4 D 217 |
Chain | Residue |
B | ARG192 |
D | HIS54 |
D | PRO55 |
D | ASN56 |
D | HIS57 |
D | HOH524 |
D | HOH616 |
site_id | CC3 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE SO4 D 218 |
Chain | Residue |
D | ASP67 |
D | GLY68 |
D | GLY69 |
D | ALA70 |
D | THR94 |
D | ALA97 |
D | ARG139 |
D | HOH260 |
D | HOH615 |
site_id | CC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 D 219 |
Chain | Residue |
D | GLY170 |
D | GLY171 |
D | HOH286 |
D | HOH540 |
D | HOH541 |
site_id | CC5 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE GOL E 2001 |
Chain | Residue |
E | ALA88 |
E | ALA90 |
E | HIS91 |
E | ILE92 |
E | ILE95 |
E | ASP121 |
E | TRP125 |
E | HOH260 |
site_id | CC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL E 2002 |
Chain | Residue |
E | ILE113 |
E | TRP117 |
E | TYR135 |
E | HIS136 |
E | HOH229 |
E | HOH282 |
site_id | CC7 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE SO4 E 216 |
Chain | Residue |
C | ARG139 |
E | ASP67 |
E | GLY68 |
E | GLY69 |
E | ALA70 |
E | THR94 |
E | ALA97 |
E | HOH233 |
E | HOH488 |
E | HOH617 |
site_id | CC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE SO4 E 217 |
Chain | Residue |
A | ARG192 |
E | ASN53 |
E | HIS54 |
E | PRO55 |
E | ASN56 |
E | HIS57 |
site_id | CC9 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE SO4 E 218 |
Chain | Residue |
E | GLY170 |
E | GLY171 |
E | ALA190 |
E | GLY191 |
E | HOH423 |
E | HOH442 |
E | HOH458 |
E | HOH608 |
E | HOH721 |