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3IB8

Crystal structure of full length Rv0805 in complex with 5'-AMP

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0004112molecular_functioncyclic-nucleotide phosphodiesterase activity
A0004115molecular_function3',5'-cyclic-AMP phosphodiesterase activity
A0005506molecular_functioniron ion binding
A0005515molecular_functionprotein binding
A0005576cellular_componentextracellular region
A0005737cellular_componentcytoplasm
A0005886cellular_componentplasma membrane
A0008199molecular_functionferric iron binding
A0008663molecular_function2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
A0009274cellular_componentpeptidoglycan-based cell wall
A0016787molecular_functionhydrolase activity
A0030145molecular_functionmanganese ion binding
A0030313cellular_componentcell envelope
A0042301molecular_functionphosphate ion binding
A0042545biological_processcell wall modification
A0046872molecular_functionmetal ion binding
A0047555molecular_function3',5'-cyclic-GMP phosphodiesterase activity
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE FE A 444
ChainResidue
AASP21
AHIS23
AASP63
AHIS209
AMN555
AHOH565
AAMP666

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MN A 555
ChainResidue
AHIS169
AHIS207
AFE444
AHOH565
AAMP666
AASP63
AASN97

site_idAC3
Number of Residues22
DetailsBINDING SITE FOR RESIDUE AMP A 666
ChainResidue
AHIS23
AASP63
AASN97
AHIS98
AALA157
AMET179
AALA180
ATHR182
AHIS207
ALEU208
AHIS209
AHOH359
AFE444
AHOH474
AHOH485
AHOH492
AHOH495
AHOH499
AHOH500
AHOH549
AMN555
AHOH565

site_idAC4
Number of Residues13
DetailsBINDING SITE FOR RESIDUE BTB A 777
ChainResidue
AASP66
ALYS67
AASN97
AHIS98
AASP99
AVAL121
APRO137
AGLY138
AHIS140
AGLU155
AHOH387
AHOH393
AHOH512

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MPD A 778
ChainResidue
AVAL92
ATRP93
AARG120
ACYS122

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MPD A 779
ChainResidue
AASP119
ASER147
ATRP151
AHOH383

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MPD A 780
ChainResidue
AARG77
AGLU81
ALEU109

site_idAC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ACT A 1000
ChainResidue
AALA160
AHOH481

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues7
DetailsBINDING: BINDING => ECO:0000269|PubMed:17059828, ECO:0000269|PubMed:19801656
ChainResidueDetails
AASP21
AHIS23
AASP63
AASN97
AHIS169
AHIS207
AHIS209

site_idSWS_FT_FI2
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0000269|PubMed:26904001
ChainResidueDetails
ATHR309

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PDB entries from 2024-07-24

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