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3I12

The crystal structure of the D-alanyl-alanine synthetase A from Salmonella enterica subsp. enterica serovar Typhimurium str. LT2

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0008360biological_processregulation of cell shape
A0008716molecular_functionD-alanine-D-alanine ligase activity
A0009252biological_processpeptidoglycan biosynthetic process
A0016874molecular_functionligase activity
A0046872molecular_functionmetal ion binding
A0071555biological_processcell wall organization
B0003824molecular_functioncatalytic activity
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0008360biological_processregulation of cell shape
B0008716molecular_functionD-alanine-D-alanine ligase activity
B0009252biological_processpeptidoglycan biosynthetic process
B0016874molecular_functionligase activity
B0046872molecular_functionmetal ion binding
B0071555biological_processcell wall organization
C0003824molecular_functioncatalytic activity
C0005524molecular_functionATP binding
C0005737cellular_componentcytoplasm
C0005829cellular_componentcytosol
C0008360biological_processregulation of cell shape
C0008716molecular_functionD-alanine-D-alanine ligase activity
C0009252biological_processpeptidoglycan biosynthetic process
C0016874molecular_functionligase activity
C0046872molecular_functionmetal ion binding
C0071555biological_processcell wall organization
D0003824molecular_functioncatalytic activity
D0005524molecular_functionATP binding
D0005737cellular_componentcytoplasm
D0005829cellular_componentcytosol
D0008360biological_processregulation of cell shape
D0008716molecular_functionD-alanine-D-alanine ligase activity
D0009252biological_processpeptidoglycan biosynthetic process
D0016874molecular_functionligase activity
D0046872molecular_functionmetal ion binding
D0071555biological_processcell wall organization
Functional Information from PDB Data
site_idAC1
Number of Residues17
DetailsBINDING SITE FOR RESIDUE ADP A 365
ChainResidue
ALYS141
AILE224
AGLU228
ALEU249
APHE304
AASN314
AGLU315
AHOH371
AHOH374
APHE183
ALYS185
AGLY190
ASER191
ASER192
AGLU221
AGLN222
AGLY223

site_idAC2
Number of Residues14
DetailsBINDING SITE FOR RESIDUE ADP B 365
ChainResidue
BLYS141
BPHE183
BLYS185
BGLY190
BSER191
BSER192
BGLU221
BGLN222
BGLY223
BILE224
BGLU228
BPHE304
BASN314
BGLU315

site_idAC3
Number of Residues13
DetailsBINDING SITE FOR RESIDUE ADP C 365
ChainResidue
CPHE183
CLYS185
CGLY190
CSER191
CSER192
CGLU221
CGLN222
CGLY223
CILE224
CGLU228
CPHE304
CASN314
CGLU315

site_idAC4
Number of Residues16
DetailsBINDING SITE FOR RESIDUE ADP D 365
ChainResidue
DLYS141
DPHE183
DLYS185
DSER191
DSER192
DGLU221
DGLN222
DGLY223
DILE224
DGLU228
DLEU249
DPHE304
DASN314
DGLU315
DHOH415
DHOH443

Functional Information from PROSITE/UniProt
site_idPS00843
Number of Residues12
DetailsDALA_DALA_LIGASE_1 D-alanine--D-alanine ligase signature 1. HGtlGEDGsLQG
ChainResidueDetails
AHIS107-GLY118

site_idPS00844
Number of Residues29
DetailsDALA_DALA_LIGASE_2 D-alanine--D-alanine ligase signature 2. LgcaGmARVDVFltadnevv....InEINTlPG
ChainResidueDetails
ALEU293-GLY321

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues16
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AGLU175
CASP302
CGLU315
CASN317
DGLU175
DASP302
DGLU315
DASN317
AASP302
AGLU315
AASN317
BGLU175
BASP302
BGLU315
BASN317
CGLU175

Catalytic Information from CSA
site_idCSA1
Number of Residues5
DetailsAnnotated By Reference To The Literature 2dln
ChainResidueDetails
AARG300
AGLU16
ASER191
ATYR260
AGLY321

site_idCSA2
Number of Residues4
DetailsAnnotated By Reference To The Literature 2dln
ChainResidueDetails
BARG300
BGLU16
BSER191
BGLY321

site_idCSA3
Number of Residues4
DetailsAnnotated By Reference To The Literature 2dln
ChainResidueDetails
CARG300
CGLU16
CSER191
CGLY321

site_idCSA4
Number of Residues4
DetailsAnnotated By Reference To The Literature 2dln
ChainResidueDetails
DARG300
DGLU16
DSER191
DGLY321

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PDB entries from 2024-11-06

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