Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3HYW

3-D X-Ray structure of the sulfide:quinone oxidoreductase of the hyperthermophilic bacterium Aquifex aeolicus in complex with decylubiquinone

Replaces:  3H28
Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003955molecular_functionNAD(P)H dehydrogenase (quinone) activity
A0016020cellular_componentmembrane
A0016491molecular_functionoxidoreductase activity
A0019646biological_processaerobic electron transport chain
A0042802molecular_functionidentical protein binding
A0048038molecular_functionquinone binding
A0070224molecular_functionsulfide:quinone oxidoreductase activity
B0000166molecular_functionnucleotide binding
B0003955molecular_functionNAD(P)H dehydrogenase (quinone) activity
B0016020cellular_componentmembrane
B0016491molecular_functionoxidoreductase activity
B0019646biological_processaerobic electron transport chain
B0042802molecular_functionidentical protein binding
B0048038molecular_functionquinone binding
B0070224molecular_functionsulfide:quinone oxidoreductase activity
C0000166molecular_functionnucleotide binding
C0003955molecular_functionNAD(P)H dehydrogenase (quinone) activity
C0016020cellular_componentmembrane
C0016491molecular_functionoxidoreductase activity
C0019646biological_processaerobic electron transport chain
C0042802molecular_functionidentical protein binding
C0048038molecular_functionquinone binding
C0070224molecular_functionsulfide:quinone oxidoreductase activity
D0000166molecular_functionnucleotide binding
D0003955molecular_functionNAD(P)H dehydrogenase (quinone) activity
D0016020cellular_componentmembrane
D0016491molecular_functionoxidoreductase activity
D0019646biological_processaerobic electron transport chain
D0042802molecular_functionidentical protein binding
D0048038molecular_functionquinone binding
D0070224molecular_functionsulfide:quinone oxidoreductase activity
E0000166molecular_functionnucleotide binding
E0003955molecular_functionNAD(P)H dehydrogenase (quinone) activity
E0016020cellular_componentmembrane
E0016491molecular_functionoxidoreductase activity
E0019646biological_processaerobic electron transport chain
E0042802molecular_functionidentical protein binding
E0048038molecular_functionquinone binding
E0070224molecular_functionsulfide:quinone oxidoreductase activity
F0000166molecular_functionnucleotide binding
F0003955molecular_functionNAD(P)H dehydrogenase (quinone) activity
F0016020cellular_componentmembrane
F0016491molecular_functionoxidoreductase activity
F0019646biological_processaerobic electron transport chain
F0042802molecular_functionidentical protein binding
F0048038molecular_functionquinone binding
F0070224molecular_functionsulfide:quinone oxidoreductase activity
Functional Information from PDB Data
site_idAC1
Number of Residues40
DetailsBINDING SITE FOR RESIDUE FAD A 441
ChainResidue
AILE8
ATHR42
APRO43
ALYS77
AALA78
AALA104
ATHR105
AGLY106
AILE123
ACYS124
APRO159
AGLY9
AGLY293
AVAL294
ALYS312
ATHR313
AGLY314
AILE317
ALYS382
ASO4433
AHOH437
AHOH439
AGLY10
AHOH453
AHOH458
ADCQ500
AHOH513
AHOH515
AH2S700
APS9800
AHOH1162
AHOH1247
AHOH1509
AGLY11
AHOH1512
AVAL12
AGLY13
ASER34
AASP35
AARG36

site_idAC2
Number of Residues13
DetailsBINDING SITE FOR RESIDUE DCQ A 500
ChainResidue
AGLY314
AMET315
AGLU318
AILE346
APHE381
APHE385
APHE402
AGLU403
AFAD441
ALMT600
AHOH1162
AHOH1514
BDCQ500

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE LMT A 600
ChainResidue
ALYS373
ATRP377
APHE381
APHE410
ASO4434
ADCQ500
BLMT600

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE H2S A 700
ChainResidue
ACYS124
AMET251
AFAD441

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PS9 A 800
ChainResidue
ACSS156
APHE157
AGLY158
APRO159
ACSS347
AFAD441

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 431
ChainResidue
AARG369
ALYS412
ELYS172
EHOH589

site_idAC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 432
ChainResidue
ATRP391
AARG394
AASN395
AHOH436
AHOH1182
AHOH1434
BSER401

site_idAC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 A 433
ChainResidue
ALYS77
ALYS108
APRO257
AGLU258
AVAL259
AFAD441
AHOH515
AHOH616
AHOH1359

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 434
ChainResidue
AGLY375
ALYS376
ATRP377
ALMT600

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 435
ChainResidue
ALYS172
AHOH1315
CARG369

site_idBC2
Number of Residues41
DetailsBINDING SITE FOR RESIDUE FAD B 441
ChainResidue
BGLY11
BVAL12
BGLY13
BSER34
BASP35
BARG36
BTHR42
BPRO43
BLYS77
BALA78
BALA104
BTHR105
BGLY106
BILE123
BCYS124
BPRO159
BGLY293
BVAL294
BLYS312
BTHR313
BGLY314
BILE317
BCSS347
BLYS382
BHOH435
BHOH442
BHOH443
BHOH446
BHOH449
BHOH461
BHOH489
BDCQ500
BH2S700
BHOH740
BPS9802
BHOH984
BHOH1515
BHOH1518
BILE8
BGLY9
BGLY10

site_idBC3
Number of Residues16
DetailsBINDING SITE FOR RESIDUE DCQ B 500
ChainResidue
ADCQ500
BMET315
BGLU318
BILE346
BILE348
BPHE381
BPHE385
BTYR388
BPHE402
BGLU403
BLEU407
BFAD441
BHOH446
BLMT600
BHOH1518
BHOH1519

site_idBC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE LMT B 600
ChainResidue
APHE381
ALMT600
BLYS373
BTRP377
BPHE381
BPHE410
BSO4434
BDCQ500
BHOH605

site_idBC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE H2S B 700
ChainResidue
BCYS124
BFAD441

site_idBC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PS9 B 800
ChainResidue
BCSS156
BPHE157
BGLY158

site_idBC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PS9 B 802
ChainResidue
BGLY158
BPRO159
BGLU162
BCSS347
BILE348
BFAD441

site_idBC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 431
ChainResidue
BARG369
BLYS412
DLYS172

site_idBC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 B 432
ChainResidue
ASER401
BTRP391
BARG394
BASN395
BHOH447
BHOH1457
BHOH1480

site_idCC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 433
ChainResidue
BLYS77
BLYS108
BPRO257
BGLU258

site_idCC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 434
ChainResidue
BGLY375
BLYS376
BTRP377
BLMT600
BHOH1329

site_idCC3
Number of Residues39
DetailsBINDING SITE FOR RESIDUE FAD C 441
ChainResidue
CGLY9
CGLY10
CGLY11
CVAL12
CGLY13
CSER34
CASP35
CARG36
CTHR42
CPRO43
CLYS77
CALA78
CALA104
CTHR105
CGLY106
CILE123
CCYS124
CPRO159
CGLY293
CVAL294
CLYS312
CTHR313
CGLY314
CILE317
CLYS382
CSO4433
CHOH435
CHOH439
CHOH442
CHOH457
CHOH459
CHOH466
CHOH487
CDCQ500
CHOH641
CH2S700
CHOH770
CPS9800
CHOH1027

site_idCC4
Number of Residues13
DetailsBINDING SITE FOR RESIDUE DCQ C 500
ChainResidue
CGLY314
CMET315
CGLU318
CILE346
CPHE381
CPHE385
CTYR388
CGLU403
CFAD441
CHOH459
CHOH502
DTYR388
DDCQ500

site_idCC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE LMT C 600
ChainResidue
CLYS373
CTRP377
CPHE381
CSO4434
DLMT600

site_idCC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE H2S C 700
ChainResidue
CCYS124
CFAD441

site_idCC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PS9 C 800
ChainResidue
CCSS156
CGLY158
CPRO159
CCSS347
CILE348
CALA349
CFAD441

site_idCC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 C 432
ChainResidue
CTRP391
CARG394
CASN395
CHOH1155
DSER401

site_idCC9
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 C 433
ChainResidue
CLYS77
CLYS108
CPRO257
CGLU258
CVAL259
CFAD441
CHOH641
CHOH665

site_idDC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 C 434
ChainResidue
CGLY375
CLYS376
CTRP377
CLMT600

site_idDC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 C 431
ChainResidue
CLYS172
EARG369

site_idDC3
Number of Residues38
DetailsBINDING SITE FOR RESIDUE FAD D 441
ChainResidue
DILE8
DGLY9
DGLY10
DGLY11
DVAL12
DGLY13
DSER34
DASP35
DARG36
DTHR42
DPRO43
DLYS77
DALA78
DALA104
DTHR105
DGLY106
DILE123
DCYS124
DPRO159
DVAL259
DGLY293
DVAL294
DLYS312
DTHR313
DGLY314
DILE317
DLYS382
DHOH437
DHOH443
DHOH445
DHOH466
DDCQ500
DHOH513
DH2S700
DHOH900
DHOH1171
DHOH1326
DHOH1347

site_idDC4
Number of Residues12
DetailsBINDING SITE FOR RESIDUE DCQ D 500
ChainResidue
CDCQ500
DGLY314
DMET315
DGLU318
DILE346
DPHE381
DPHE385
DPHE402
DGLU403
DFAD441
DHOH443
DLMT600

site_idDC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE LMT D 600
ChainResidue
CPHE381
CLMT600
DLYS373
DTRP377
DPHE381
DSO4434
DDCQ500

site_idDC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE H2S D 700
ChainResidue
DCYS124
DCSS156
DFAD441

site_idDC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PS9 D 800
ChainResidue
DCSS156
DGLY158
DPS9802

site_idDC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PS9 D 802
ChainResidue
DCSS347
DPS9800

site_idDC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 D 431
ChainResidue
DARG369
DLYS412
FLYS172

site_idEC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 D 432
ChainResidue
CSER401
DTRP391
DARG394
DASN395
DHOH478

site_idEC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 D 433
ChainResidue
DLYS77
DLYS108
DPRO257
DGLU258

site_idEC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 D 434
ChainResidue
DMET374
DGLY375
DLYS376
DLMT600

site_idEC4
Number of Residues37
DetailsBINDING SITE FOR RESIDUE FAD E 441
ChainResidue
EILE8
EGLY9
EGLY10
EGLY11
EVAL12
EGLY13
ESER34
EASP35
EARG36
ETHR42
EPRO43
ELYS77
EALA78
EALA104
ETHR105
EGLY106
EILE123
ECYS124
EGLY293
EVAL294
ELYS312
ETHR313
EGLY314
ELYS382
ESO4433
EHOH436
EHOH444
EHOH446
EHOH459
EHOH461
EHOH474
EDCQ500
EH2S700
EPS9800
EHOH1328
EHOH1365
EHOH1526

site_idEC5
Number of Residues10
DetailsBINDING SITE FOR RESIDUE DCQ E 500
ChainResidue
EGLY314
EMET315
EGLU318
EILE346
EPHE381
EPHE385
EPHE402
EFAD441
EHOH1528
FDCQ500

site_idEC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE LMT E 600
ChainResidue
ELYS373
ETRP377
EPHE381
ELEU411
ESO4434
EHOH435
FLMT600

site_idEC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE H2S E 700
ChainResidue
ECYS124
EFAD441

site_idEC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PS9 E 800
ChainResidue
ECSS156
EGLY158
EPRO159
ECSS347
EFAD441

site_idEC9
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 E 432
ChainResidue
ETRP391
EARG394
EASN395
EHOH488
EHOH720
EHOH1363
EHOH1387
FSER401

site_idFC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 E 433
ChainResidue
ELYS77
ELYS108
EPRO257
EGLU258
EVAL259
EFAD441
EHOH1354

site_idFC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 E 434
ChainResidue
EGLY375
ELYS376
ETRP377
ELMT600

site_idFC3
Number of Residues41
DetailsBINDING SITE FOR RESIDUE FAD F 441
ChainResidue
FILE8
FGLY9
FGLY10
FGLY11
FVAL12
FGLY13
FSER34
FASP35
FARG36
FTHR42
FPRO43
FLYS77
FALA78
FALA104
FTHR105
FGLY106
FILE123
FCYS124
FPRO159
FGLY293
FVAL294
FLYS312
FTHR313
FGLY314
FILE317
FLYS382
FSO4433
FHOH435
FHOH436
FHOH438
FHOH462
FHOH498
FDCQ500
FHOH506
FHOH658
FH2S700
FPS9800
FHOH1377
FHOH1448
FHOH1529
FHOH1532

site_idFC4
Number of Residues13
DetailsBINDING SITE FOR RESIDUE DCQ F 500
ChainResidue
EDCQ500
FGLY314
FMET315
FGLU318
FILE346
FILE348
FPHE381
FPHE385
FGLU403
FFAD441
FLMT600
FHOH1531
FHOH1532

site_idFC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE LMT F 600
ChainResidue
EPHE381
ELMT600
FLYS373
FPHE381
FSO4434
FDCQ500

site_idFC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE H2S F 700
ChainResidue
FCYS124
FFAD441

site_idFC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PS9 F 800
ChainResidue
FCSS156
FGLY158
FPRO159
FCSS347
FILE348
FFAD441

site_idFC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 F 431
ChainResidue
BLYS172
FARG369

site_idFC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 F 432
ChainResidue
ESER401
FTRP391
FARG394
FASN395
FHOH446
FHOH714

site_idGC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 F 433
ChainResidue
FLYS77
FLYS108
FPRO257
FGLU258
FVAL259
FFAD441

site_idGC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 F 434
ChainResidue
FGLY375
FLYS376
FTRP377
FLMT600

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues12
DetailsACT_SITE: Cysteine persulfide intermediate => ECO:0000250|UniProtKB:Q7ZAG8, ECO:0000303|PubMed:19487671
ChainResidueDetails
ACSS156
ACSS347
BCSS156
BCSS347
CCSS156
CCSS347
DCSS156
DCSS347
ECSS156
ECSS347
FCSS156
FCSS347

site_idSWS_FT_FI2
Number of Residues48
DetailsBINDING: BINDING => ECO:0000269|PubMed:19487671
ChainResidueDetails
BVAL294
BGLY314
BILE346
BLYS382
CGLY9
CSER34
CTHR42
CTHR105
CVAL294
CGLY314
CILE346
CLYS382
DGLY9
DSER34
DTHR42
DTHR105
DVAL294
DGLY314
DILE346
DLYS382
EGLY9
ESER34
ETHR42
ETHR105
EVAL294
EGLY314
EILE346
ELYS382
FGLY9
FSER34
FTHR42
FTHR105
FVAL294
FGLY314
FILE346
FLYS382
AGLY9
ASER34
ATHR42
ATHR105
AVAL294
AGLY314
AILE346
ALYS382
BGLY9
BSER34
BTHR42
BTHR105

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon