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3H3F

Rabbit muscle L-lactate dehydrogenase in complex with NADH and oxamate

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0004459molecular_functionL-lactate dehydrogenase activity
A0005737cellular_componentcytoplasm
A0006089biological_processlactate metabolic process
A0006090biological_processpyruvate metabolic process
A0016491molecular_functionoxidoreductase activity
A0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
A0019752biological_processcarboxylic acid metabolic process
B0003824molecular_functioncatalytic activity
B0004459molecular_functionL-lactate dehydrogenase activity
B0005737cellular_componentcytoplasm
B0006089biological_processlactate metabolic process
B0006090biological_processpyruvate metabolic process
B0016491molecular_functionoxidoreductase activity
B0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
B0019752biological_processcarboxylic acid metabolic process
C0003824molecular_functioncatalytic activity
C0004459molecular_functionL-lactate dehydrogenase activity
C0005737cellular_componentcytoplasm
C0006089biological_processlactate metabolic process
C0006090biological_processpyruvate metabolic process
C0016491molecular_functionoxidoreductase activity
C0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
C0019752biological_processcarboxylic acid metabolic process
D0003824molecular_functioncatalytic activity
D0004459molecular_functionL-lactate dehydrogenase activity
D0005737cellular_componentcytoplasm
D0006089biological_processlactate metabolic process
D0006090biological_processpyruvate metabolic process
D0016491molecular_functionoxidoreductase activity
D0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
D0019752biological_processcarboxylic acid metabolic process
E0003824molecular_functioncatalytic activity
E0004459molecular_functionL-lactate dehydrogenase activity
E0005737cellular_componentcytoplasm
E0006089biological_processlactate metabolic process
E0006090biological_processpyruvate metabolic process
E0016491molecular_functionoxidoreductase activity
E0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
E0019752biological_processcarboxylic acid metabolic process
F0003824molecular_functioncatalytic activity
F0004459molecular_functionL-lactate dehydrogenase activity
F0005737cellular_componentcytoplasm
F0006089biological_processlactate metabolic process
F0006090biological_processpyruvate metabolic process
F0016491molecular_functionoxidoreductase activity
F0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
F0019752biological_processcarboxylic acid metabolic process
G0003824molecular_functioncatalytic activity
G0004459molecular_functionL-lactate dehydrogenase activity
G0005737cellular_componentcytoplasm
G0006089biological_processlactate metabolic process
G0006090biological_processpyruvate metabolic process
G0016491molecular_functionoxidoreductase activity
G0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
G0019752biological_processcarboxylic acid metabolic process
H0003824molecular_functioncatalytic activity
H0004459molecular_functionL-lactate dehydrogenase activity
H0005737cellular_componentcytoplasm
H0006089biological_processlactate metabolic process
H0006090biological_processpyruvate metabolic process
H0016491molecular_functionoxidoreductase activity
H0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
H0019752biological_processcarboxylic acid metabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues22
DetailsBINDING SITE FOR RESIDUE NAI A 332
ChainResidue
AGLY28
AILE115
AVAL135
ASER136
AASN137
AHIS192
AILE251
AOXM333
AHOH335
AHOH359
AHOH1075
AALA29
AHOH1095
AHOH1117
EGLY102
AVAL30
AASP51
AVAL52
AMET53
ATHR94
AALA95
AGLY96

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE OXM A 333
ChainResidue
AASN137
AARG168
AHIS192
AALA237
ATHR247
ANAI332

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACT A 334
ChainResidue
AASP42
APHE70
AARG72

site_idAC4
Number of Residues26
DetailsBINDING SITE FOR RESIDUE NAI B 332
ChainResidue
BGLY28
BALA29
BVAL30
BASP51
BVAL52
BMET53
BLYS56
BTHR94
BALA95
BGLY96
BALA97
BARG98
BVAL135
BASN137
BLEU164
BHIS192
BTHR247
BILE251
BOXM333
BHOH336
BHOH339
BHOH344
BHOH347
BHOH364
BHOH365
BHOH422

site_idAC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE OXM B 333
ChainResidue
BGLN99
BARG105
BASN137
BARG168
BHIS192
BALA237
BTHR247
BNAI332

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ACT B 334
ChainResidue
BLYS304
BVAL305
BHOH392
BHOH394

site_idAC7
Number of Residues28
DetailsBINDING SITE FOR RESIDUE NAI C 332
ChainResidue
CGLY28
CALA29
CVAL30
CASP51
CVAL52
CMET53
CLYS56
CTHR94
CALA95
CGLY96
CALA97
CARG98
CILE119
CVAL135
CASN137
CSER160
CHIS192
CTHR247
CILE251
COXM333
CHOH351
CHOH352
CHOH366
CHOH368
CHOH555
CHOH729
CHOH730
CHOH776

site_idAC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE OXM C 333
ChainResidue
CASN137
CARG168
CHIS192
CALA237
CTHR247
CNAI332
CGLN99
CARG105

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ACT C 334
ChainResidue
CASN87
CSER88
CSER127
CPRO128
CHIS129

site_idBC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE ACT C 335
ChainResidue
CLEU243

site_idBC2
Number of Residues20
DetailsBINDING SITE FOR RESIDUE NAI D 332
ChainResidue
DGLY26
DGLY28
DALA29
DVAL30
DASP51
DVAL52
DMET53
DTYR82
DTHR94
DALA95
DPHE118
DILE119
DVAL135
DSER136
DASN137
DVAL139
DSER160
DHOH567
DHOH645
DHOH731

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE OXM D 333
ChainResidue
DASN137
DARG168
DHIS192
DALA237

site_idBC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE ACT D 334
ChainResidue
DLYS316

site_idBC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ACT D 335
ChainResidue
DGLY281
DGLU312

site_idBC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ACT D 336
ChainResidue
DLYS316
DACT337

site_idBC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ACT D 337
ChainResidue
DSER309
DGLU312
DALA313
DACT336

site_idBC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACT D 338
ChainResidue
DMET40
DASP42
DPHE70

site_idBC9
Number of Residues19
DetailsBINDING SITE FOR RESIDUE NAI E 332
ChainResidue
EGLY28
EALA29
EVAL30
EASP51
EVAL52
EMET53
ETHR94
EALA95
EGLY96
EILE115
EVAL135
EASN137
EHIS192
ETHR247
EILE251
EOXM333
EHOH433
EHOH568
EHOH1054

site_idCC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE OXM E 333
ChainResidue
EASN137
ELEU164
EARG168
EHIS192
EALA237
ETHR247
ENAI332

site_idCC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ACT E 334
ChainResidue
ELEU182
EHIS185
EHOH357
EHOH532
GARG170

site_idCC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ACT E 335
ChainResidue
EASP42
EPHE70

site_idCC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ACT E 336
ChainResidue
EARG267
EHOH884

site_idCC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE ACT E 337
ChainResidue
ELYS242

site_idCC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACT E 338
ChainResidue
EASP42
HASP42
HACT337

site_idCC7
Number of Residues29
DetailsBINDING SITE FOR RESIDUE NAI F 332
ChainResidue
BASN107
FGLY28
FALA29
FVAL30
FASP51
FVAL52
FMET53
FLYS56
FTHR94
FALA95
FGLY96
FALA97
FARG98
FVAL135
FASN137
FSER160
FHIS192
FTHR247
FILE251
FOXM333
FHOH341
FHOH343
FHOH351
FHOH352
FHOH353
FHOH390
FHOH395
FHOH447
FHOH1065

site_idCC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE OXM F 333
ChainResidue
FGLN99
FARG105
FASN137
FARG168
FHIS192
FALA237
FTHR247
FNAI332

site_idCC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACT F 334
ChainResidue
FMET40
FPHE70
FARG72

site_idDC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ACT F 335
ChainResidue
FHIS16
FHOH1191

site_idDC2
Number of Residues27
DetailsBINDING SITE FOR RESIDUE NAI G 332
ChainResidue
GGLY28
GALA29
GVAL30
GASP51
GMET53
GLYS56
GTHR94
GALA95
GGLY96
GALA97
GARG98
GILE119
GVAL135
GSER136
GASN137
GSER160
GHIS192
GTHR247
GILE251
GOXM333
GHOH347
GHOH350
GHOH354
GHOH367
GHOH369
GHOH378
GHOH717

site_idDC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE OXM G 333
ChainResidue
GGLN99
GARG105
GASN137
GARG168
GHIS192
GALA237
GTHR247
GNAI332

site_idDC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ACT G 334
ChainResidue
GASP42
GPHE70
GLEU71
GARG72

site_idDC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ACT G 335
ChainResidue
GLEU213
GHIS214
GPRO215
GLYS223
HGLN6

site_idDC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACT G 336
ChainResidue
GLEU329
GGLN330
GPHE331

site_idDC7
Number of Residues23
DetailsBINDING SITE FOR RESIDUE NAI H 332
ChainResidue
DGLN330
HGLY28
HALA29
HVAL30
HASP51
HVAL52
HMET53
HTHR94
HALA95
HGLY96
HARG98
HILE115
HVAL135
HASN137
HHIS192
HTHR247
HOXM333
HHOH341
HHOH344
HHOH369
HHOH372
HHOH572
HHOH849

site_idDC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE OXM H 333
ChainResidue
HASN137
HARG168
HHIS192
HALA237
HTHR247
HNAI332

site_idDC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ACT H 334
ChainResidue
HVAL305
HHOH853

site_idEC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ACT H 335
ChainResidue
HMET40
HASP42

site_idEC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE ACT H 336
ChainResidue
HLYS4

site_idEC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACT H 337
ChainResidue
EACT338
HLYS41
HGLU260

Functional Information from PROSITE/UniProt
site_idPS00064
Number of Residues7
DetailsL_LDH L-lactate dehydrogenase active site. LGEHGDS
ChainResidueDetails
ALEU189-SER195

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsACT_SITE: Proton acceptor => ECO:0000269|PubMed:19715328
ChainResidueDetails
AHIS192
BHIS192
CHIS192
DHIS192
EHIS192
FHIS192
GHIS192
HHIS192

site_idSWS_FT_FI2
Number of Residues48
DetailsBINDING:
ChainResidueDetails
AGLY28
BASN137
BARG168
BTHR247
CGLY28
CARG98
CARG105
CASN137
CARG168
CTHR247
DGLY28
AARG98
DARG98
DARG105
DASN137
DARG168
DTHR247
EGLY28
EARG98
EARG105
EASN137
EARG168
AARG105
ETHR247
FGLY28
FARG98
FARG105
FASN137
FARG168
FTHR247
GGLY28
GARG98
GARG105
AASN137
GASN137
GARG168
GTHR247
HGLY28
HARG98
HARG105
HASN137
HARG168
HTHR247
AARG168
ATHR247
BGLY28
BARG98
BARG105

site_idSWS_FT_FI3
Number of Residues8
DetailsMOD_RES: N-acetylalanine => ECO:0000250|UniProtKB:P00338
ChainResidueDetails
AALA1
BALA1
CALA1
DALA1
EALA1
FALA1
GALA1
HALA1

site_idSWS_FT_FI4
Number of Residues24
DetailsMOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P06151
ChainResidueDetails
ALYS4
DLYS4
DLYS117
DLYS317
ELYS4
ELYS117
ELYS317
FLYS4
FLYS117
FLYS317
GLYS4
ALYS117
GLYS117
GLYS317
HLYS4
HLYS117
HLYS317
ALYS317
BLYS4
BLYS117
BLYS317
CLYS4
CLYS117
CLYS317

site_idSWS_FT_FI5
Number of Residues24
DetailsMOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:P00338
ChainResidueDetails
ALYS13
DLYS13
DLYS80
DLYS125
ELYS13
ELYS80
ELYS125
FLYS13
FLYS80
FLYS125
GLYS13
ALYS80
GLYS80
GLYS125
HLYS13
HLYS80
HLYS125
ALYS125
BLYS13
BLYS80
BLYS125
CLYS13
CLYS80
CLYS125

site_idSWS_FT_FI6
Number of Residues8
DetailsMOD_RES: N6-acetyllysine; alternate => ECO:0000250|UniProtKB:P00338
ChainResidueDetails
ALYS56
BLYS56
CLYS56
DLYS56
ELYS56
FLYS56
GLYS56
HLYS56

site_idSWS_FT_FI7
Number of Residues24
DetailsMOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:P06151
ChainResidueDetails
ALYS223
DLYS223
DLYS231
DLYS242
ELYS223
ELYS231
ELYS242
FLYS223
FLYS231
FLYS242
GLYS223
ALYS231
GLYS231
GLYS242
HLYS223
HLYS231
HLYS242
ALYS242
BLYS223
BLYS231
BLYS242
CLYS223
CLYS231
CLYS242

site_idSWS_FT_FI8
Number of Residues8
DetailsMOD_RES: Phosphotyrosine => ECO:0000250|UniProtKB:P06151
ChainResidueDetails
ATYR238
BTYR238
CTYR238
DTYR238
ETYR238
FTYR238
GTYR238
HTYR238

site_idSWS_FT_FI9
Number of Residues16
DetailsMOD_RES: Phosphothreonine => ECO:0000250|UniProtKB:P04642
ChainResidueDetails
ATHR308
ETHR321
FTHR308
FTHR321
GTHR308
GTHR321
HTHR308
HTHR321
ATHR321
BTHR308
BTHR321
CTHR308
CTHR321
DTHR308
DTHR321
ETHR308

site_idSWS_FT_FI10
Number of Residues8
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P00338
ChainResidueDetails
ASER309
BSER309
CSER309
DSER309
ESER309
FSER309
GSER309
HSER309

site_idSWS_FT_FI11
Number of Residues16
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate => ECO:0000250|UniProtKB:P00338
ChainResidueDetails
ALYS56
FLYS56
GLYS56
HLYS56
BLYS56
CLYS56
DLYS56
ELYS56

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1emd
ChainResidueDetails
AHIS192
AASP165

site_idCSA10
Number of Residues3
DetailsAnnotated By Reference To The Literature 1emd
ChainResidueDetails
BHIS192
BASP165
BARG168

site_idCSA11
Number of Residues3
DetailsAnnotated By Reference To The Literature 1emd
ChainResidueDetails
CHIS192
CASP165
CARG168

site_idCSA12
Number of Residues3
DetailsAnnotated By Reference To The Literature 1emd
ChainResidueDetails
DHIS192
DASP165
DARG168

site_idCSA13
Number of Residues3
DetailsAnnotated By Reference To The Literature 1emd
ChainResidueDetails
EHIS192
EASP165
EARG168

site_idCSA14
Number of Residues3
DetailsAnnotated By Reference To The Literature 1emd
ChainResidueDetails
FHIS192
FASP165
FARG168

site_idCSA15
Number of Residues3
DetailsAnnotated By Reference To The Literature 1emd
ChainResidueDetails
GHIS192
GASP165
GARG168

site_idCSA16
Number of Residues3
DetailsAnnotated By Reference To The Literature 1emd
ChainResidueDetails
HHIS192
HASP165
HARG168

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1emd
ChainResidueDetails
BHIS192
BASP165

site_idCSA3
Number of Residues2
DetailsAnnotated By Reference To The Literature 1emd
ChainResidueDetails
CHIS192
CASP165

site_idCSA4
Number of Residues2
DetailsAnnotated By Reference To The Literature 1emd
ChainResidueDetails
DHIS192
DASP165

site_idCSA5
Number of Residues2
DetailsAnnotated By Reference To The Literature 1emd
ChainResidueDetails
EHIS192
EASP165

site_idCSA6
Number of Residues2
DetailsAnnotated By Reference To The Literature 1emd
ChainResidueDetails
FHIS192
FASP165

site_idCSA7
Number of Residues2
DetailsAnnotated By Reference To The Literature 1emd
ChainResidueDetails
GHIS192
GASP165

site_idCSA8
Number of Residues2
DetailsAnnotated By Reference To The Literature 1emd
ChainResidueDetails
HHIS192
HASP165

site_idCSA9
Number of Residues3
DetailsAnnotated By Reference To The Literature 1emd
ChainResidueDetails
AHIS192
AASP165
AARG168

226707

PDB entries from 2024-10-30

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