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3H1U

Structure of ubiquitin in complex with Cd ions

Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CD A 77
ChainResidue
AGLU64
AHIS68
AHOH98

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CD A 78
ChainResidue
AMET1
AGLU16
AASP32
AHOH81

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CD A 79
ChainResidue
AASP21
ALYS29
AHOH80
AGLU18
AGLU18

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CD B 77
ChainResidue
BGLU18
BGLU18
BASP21
BLYS29
BHOH80

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CD B 78
ChainResidue
AGLY75
BMET1
BGLU16
BASP32

Functional Information from PROSITE/UniProt
site_idPS00299
Number of Residues26
DetailsUBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD
ChainResidueDetails
ALYS27-ASP52

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsSITE: Interacts with activating enzyme
ChainResidueDetails
BARG54
BARG72
AARG54
AARG72

site_idSWS_FT_FI2
Number of Residues2
DetailsSITE: Essential for function
ChainResidueDetails
BHIS68
AHIS68

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: Phosphoserine; by PINK1 => ECO:0000250|UniProtKB:P0CG48
ChainResidueDetails
BSER65
ASER65

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: ADP-ribosylglycine => ECO:0000250|UniProtKB:P0CG48
ChainResidueDetails
BGLY76
AGLY76

site_idSWS_FT_FI5
Number of Residues14
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P0CG48
ChainResidueDetails
ALYS27
ALYS29
ALYS33
ALYS48
ALYS63
BLYS6
BLYS11
BLYS27
BLYS29
BLYS33
BLYS48
BLYS63
ALYS11
ALYS6

site_idSWS_FT_FI6
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins) => ECO:0000255|PROSITE-ProRule:PRU00214
ChainResidueDetails
AGLY76
BGLY76

218500

PDB entries from 2024-04-17

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