3H1C
Crystal structure of Polynucleotide Phosphorylase (PNPase) core bound to RNase E and Tungstate
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003723 | molecular_function | RNA binding |
A | 0004654 | molecular_function | polyribonucleotide nucleotidyltransferase activity |
A | 0006396 | biological_process | RNA processing |
A | 0006402 | biological_process | mRNA catabolic process |
B | 0003723 | molecular_function | RNA binding |
B | 0004654 | molecular_function | polyribonucleotide nucleotidyltransferase activity |
B | 0006396 | biological_process | RNA processing |
B | 0006402 | biological_process | mRNA catabolic process |
C | 0003723 | molecular_function | RNA binding |
C | 0004654 | molecular_function | polyribonucleotide nucleotidyltransferase activity |
C | 0006396 | biological_process | RNA processing |
C | 0006402 | biological_process | mRNA catabolic process |
G | 0003723 | molecular_function | RNA binding |
G | 0004654 | molecular_function | polyribonucleotide nucleotidyltransferase activity |
G | 0006396 | biological_process | RNA processing |
G | 0006402 | biological_process | mRNA catabolic process |
I | 0003723 | molecular_function | RNA binding |
I | 0004654 | molecular_function | polyribonucleotide nucleotidyltransferase activity |
I | 0006396 | biological_process | RNA processing |
I | 0006402 | biological_process | mRNA catabolic process |
K | 0003723 | molecular_function | RNA binding |
K | 0004654 | molecular_function | polyribonucleotide nucleotidyltransferase activity |
K | 0006396 | biological_process | RNA processing |
K | 0006402 | biological_process | mRNA catabolic process |
M | 0003723 | molecular_function | RNA binding |
M | 0004654 | molecular_function | polyribonucleotide nucleotidyltransferase activity |
M | 0006396 | biological_process | RNA processing |
M | 0006402 | biological_process | mRNA catabolic process |
O | 0003723 | molecular_function | RNA binding |
O | 0004654 | molecular_function | polyribonucleotide nucleotidyltransferase activity |
O | 0006396 | biological_process | RNA processing |
O | 0006402 | biological_process | mRNA catabolic process |
R | 0003723 | molecular_function | RNA binding |
R | 0004654 | molecular_function | polyribonucleotide nucleotidyltransferase activity |
R | 0006396 | biological_process | RNA processing |
R | 0006402 | biological_process | mRNA catabolic process |
T | 0003723 | molecular_function | RNA binding |
T | 0004654 | molecular_function | polyribonucleotide nucleotidyltransferase activity |
T | 0006396 | biological_process | RNA processing |
T | 0006402 | biological_process | mRNA catabolic process |
V | 0003723 | molecular_function | RNA binding |
V | 0004654 | molecular_function | polyribonucleotide nucleotidyltransferase activity |
V | 0006396 | biological_process | RNA processing |
V | 0006402 | biological_process | mRNA catabolic process |
X | 0003723 | molecular_function | RNA binding |
X | 0004654 | molecular_function | polyribonucleotide nucleotidyltransferase activity |
X | 0006396 | biological_process | RNA processing |
X | 0006402 | biological_process | mRNA catabolic process |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE WO4 A 550 |
Chain | Residue |
A | HIS403 |
A | SER434 |
A | GLY436 |
A | SER437 |
A | SER438 |
A | SER439 |
A | LYS494 |
A | WO4551 |
site_id | AC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE WO4 A 551 |
Chain | Residue |
A | ASP492 |
A | LYS494 |
A | GLN506 |
A | ASP508 |
A | WO4550 |
A | HIS403 |
site_id | AC3 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE WO4 B 550 |
Chain | Residue |
B | ARG399 |
B | HIS403 |
B | SER434 |
B | GLY436 |
B | SER437 |
B | SER438 |
B | SER439 |
B | LYS494 |
site_id | AC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE WO4 B 551 |
Chain | Residue |
B | ARG93 |
B | ARG97 |
B | ARG399 |
B | HIS403 |
B | ASP508 |
site_id | AC5 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE WO4 C 550 |
Chain | Residue |
C | ARG399 |
C | HIS403 |
C | SER434 |
C | GLY436 |
C | SER437 |
C | SER438 |
C | ASP486 |
C | LYS494 |
site_id | AC6 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE WO4 G 550 |
Chain | Residue |
G | ARG399 |
G | HIS403 |
G | GLY436 |
G | SER437 |
G | SER438 |
G | SER439 |
G | ASP486 |
G | LYS494 |
site_id | AC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE WO4 I 550 |
Chain | Residue |
I | HIS403 |
I | GLY436 |
I | SER438 |
I | SER439 |
I | LYS494 |
site_id | AC8 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE WO4 K 550 |
Chain | Residue |
K | SER434 |
K | GLY436 |
K | SER438 |
K | SER439 |
K | ASP486 |
K | LYS494 |
K | WO4551 |
site_id | AC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE WO4 K 551 |
Chain | Residue |
K | ARG93 |
K | ARG399 |
K | HIS403 |
K | ASP508 |
K | WO4550 |
site_id | BC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE WO4 M 550 |
Chain | Residue |
M | SER437 |
M | SER438 |
M | WO4551 |
site_id | BC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE WO4 M 551 |
Chain | Residue |
M | ARG399 |
M | ASP492 |
M | GLN506 |
M | ASP508 |
M | WO4550 |
site_id | BC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE WO4 O 550 |
Chain | Residue |
O | ARG93 |
O | ARG399 |
O | HIS403 |
O | ASP508 |
site_id | BC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE WO4 O 551 |
Chain | Residue |
O | HIS403 |
O | GLY436 |
O | SER438 |
O | SER439 |
O | LYS494 |
site_id | BC5 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE WO4 R 550 |
Chain | Residue |
R | HIS403 |
R | SER437 |
R | SER438 |
site_id | BC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE WO4 R 551 |
Chain | Residue |
R | ARG93 |
R | ARG399 |
R | HIS403 |
R | ASP492 |
R | ASP508 |
site_id | BC7 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE WO4 T 550 |
Chain | Residue |
T | ARG93 |
T | ARG399 |
T | HIS403 |
T | ASP508 |
site_id | BC8 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE WO4 T 551 |
Chain | Residue |
T | HIS403 |
T | SER437 |
T | ASP486 |
site_id | BC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE WO4 V 550 |
Chain | Residue |
V | HIS403 |
V | GLY436 |
V | SER437 |
V | SER438 |
V | WO4551 |
site_id | CC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE WO4 V 551 |
Chain | Residue |
V | ASP508 |
V | WO4550 |
V | ARG93 |
V | GLN506 |
site_id | CC2 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE WO4 X 550 |
Chain | Residue |
X | TYR380 |
X | HIS403 |
X | GLY436 |
X | SER437 |
X | SER438 |
X | SER439 |
X | WO4551 |
site_id | CC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE WO4 X 551 |
Chain | Residue |
X | ARG93 |
X | ARG399 |
X | HIS403 |
X | ASP508 |
X | WO4550 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 24 |
Details | BINDING: BINDING => ECO:0000305|PubMed:19327365 |
Chain | Residue | Details |
A | ASP486 | |
I | ASP492 | |
K | ASP486 | |
K | ASP492 | |
M | ASP486 | |
M | ASP492 | |
O | ASP486 | |
O | ASP492 | |
R | ASP486 | |
R | ASP492 | |
T | ASP486 | |
A | ASP492 | |
T | ASP492 | |
V | ASP486 | |
V | ASP492 | |
X | ASP486 | |
X | ASP492 | |
B | ASP486 | |
B | ASP492 | |
C | ASP486 | |
C | ASP492 | |
G | ASP486 | |
G | ASP492 | |
I | ASP486 |