Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

3H0R

Structure of trna-dependent amidotransferase gatcab from aquifex aeolicus

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0003824	molecular_function	catalytic activity
A	0005524	molecular_function	ATP binding
A	0006412	biological_process	translation
A	0016874	molecular_function	ligase activity
A	0030956	cellular_component	glutamyl-tRNA(Gln) amidotransferase complex
A	0050567	molecular_function	glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
B	0003824	molecular_function	catalytic activity
B	0005524	molecular_function	ATP binding
B	0006412	biological_process	translation
B	0016874	molecular_function	ligase activity
B	0016884	molecular_function	carbon-nitrogen ligase activity, with glutamine as amido-N-donor
B	0050566	molecular_function	asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity
B	0050567	molecular_function	glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
B	0070681	biological_process	glutaminyl-tRNAGln biosynthesis via transamidation
C	0005524	molecular_function	ATP binding
C	0006412	biological_process	translation
C	0006450	biological_process	regulation of translational fidelity
C	0016874	molecular_function	ligase activity
C	0050566	molecular_function	asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity
C	0050567	molecular_function	glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
C	0070681	biological_process	glutaminyl-tRNAGln biosynthesis via transamidation
D	0003824	molecular_function	catalytic activity
D	0005524	molecular_function	ATP binding
D	0006412	biological_process	translation
D	0016874	molecular_function	ligase activity
D	0030956	cellular_component	glutamyl-tRNA(Gln) amidotransferase complex
D	0050567	molecular_function	glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
E	0003824	molecular_function	catalytic activity
E	0005524	molecular_function	ATP binding
E	0006412	biological_process	translation
E	0016874	molecular_function	ligase activity
E	0016884	molecular_function	carbon-nitrogen ligase activity, with glutamine as amido-N-donor
E	0050566	molecular_function	asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity
E	0050567	molecular_function	glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
E	0070681	biological_process	glutaminyl-tRNAGln biosynthesis via transamidation
F	0005524	molecular_function	ATP binding
F	0006412	biological_process	translation
F	0006450	biological_process	regulation of translational fidelity
F	0016874	molecular_function	ligase activity
F	0050566	molecular_function	asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity
F	0050567	molecular_function	glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
F	0070681	biological_process	glutaminyl-tRNAGln biosynthesis via transamidation
G	0003824	molecular_function	catalytic activity
G	0005524	molecular_function	ATP binding
G	0006412	biological_process	translation
G	0016874	molecular_function	ligase activity
G	0030956	cellular_component	glutamyl-tRNA(Gln) amidotransferase complex
G	0050567	molecular_function	glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
H	0003824	molecular_function	catalytic activity
H	0005524	molecular_function	ATP binding
H	0006412	biological_process	translation
H	0016874	molecular_function	ligase activity
H	0016884	molecular_function	carbon-nitrogen ligase activity, with glutamine as amido-N-donor
H	0050566	molecular_function	asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity
H	0050567	molecular_function	glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
H	0070681	biological_process	glutaminyl-tRNAGln biosynthesis via transamidation
I	0005524	molecular_function	ATP binding
I	0006412	biological_process	translation
I	0006450	biological_process	regulation of translational fidelity
I	0016874	molecular_function	ligase activity
I	0050566	molecular_function	asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity
I	0050567	molecular_function	glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
I	0070681	biological_process	glutaminyl-tRNAGln biosynthesis via transamidation
J	0003824	molecular_function	catalytic activity
J	0005524	molecular_function	ATP binding
J	0006412	biological_process	translation
J	0016874	molecular_function	ligase activity
J	0030956	cellular_component	glutamyl-tRNA(Gln) amidotransferase complex
J	0050567	molecular_function	glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
K	0003824	molecular_function	catalytic activity
K	0005524	molecular_function	ATP binding
K	0006412	biological_process	translation
K	0016874	molecular_function	ligase activity
K	0016884	molecular_function	carbon-nitrogen ligase activity, with glutamine as amido-N-donor
K	0050566	molecular_function	asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity
K	0050567	molecular_function	glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
K	0070681	biological_process	glutaminyl-tRNAGln biosynthesis via transamidation
L	0005524	molecular_function	ATP binding
L	0006412	biological_process	translation
L	0006450	biological_process	regulation of translational fidelity
L	0016874	molecular_function	ligase activity
L	0050566	molecular_function	asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity
L	0050567	molecular_function	glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
L	0070681	biological_process	glutaminyl-tRNAGln biosynthesis via transamidation
M	0003824	molecular_function	catalytic activity
M	0005524	molecular_function	ATP binding
M	0006412	biological_process	translation
M	0016874	molecular_function	ligase activity
M	0030956	cellular_component	glutamyl-tRNA(Gln) amidotransferase complex
M	0050567	molecular_function	glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
N	0003824	molecular_function	catalytic activity
N	0005524	molecular_function	ATP binding
N	0006412	biological_process	translation
N	0016874	molecular_function	ligase activity
N	0016884	molecular_function	carbon-nitrogen ligase activity, with glutamine as amido-N-donor
N	0050566	molecular_function	asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity
N	0050567	molecular_function	glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
N	0070681	biological_process	glutaminyl-tRNAGln biosynthesis via transamidation
O	0005524	molecular_function	ATP binding
O	0006412	biological_process	translation
O	0006450	biological_process	regulation of translational fidelity
O	0016874	molecular_function	ligase activity
O	0050566	molecular_function	asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity
O	0050567	molecular_function	glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
O	0070681	biological_process	glutaminyl-tRNAGln biosynthesis via transamidation
P	0003824	molecular_function	catalytic activity
P	0005524	molecular_function	ATP binding
P	0006412	biological_process	translation
P	0016874	molecular_function	ligase activity
P	0030956	cellular_component	glutamyl-tRNA(Gln) amidotransferase complex
P	0050567	molecular_function	glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
Q	0003824	molecular_function	catalytic activity
Q	0005524	molecular_function	ATP binding
Q	0006412	biological_process	translation
Q	0016874	molecular_function	ligase activity
Q	0016884	molecular_function	carbon-nitrogen ligase activity, with glutamine as amido-N-donor
Q	0050566	molecular_function	asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity
Q	0050567	molecular_function	glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
Q	0070681	biological_process	glutaminyl-tRNAGln biosynthesis via transamidation
R	0005524	molecular_function	ATP binding
R	0006412	biological_process	translation
R	0006450	biological_process	regulation of translational fidelity
R	0016874	molecular_function	ligase activity
R	0050566	molecular_function	asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity
R	0050567	molecular_function	glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
R	0070681	biological_process	glutaminyl-tRNAGln biosynthesis via transamidation
S	0003824	molecular_function	catalytic activity
S	0005524	molecular_function	ATP binding
S	0006412	biological_process	translation
S	0016874	molecular_function	ligase activity
S	0030956	cellular_component	glutamyl-tRNA(Gln) amidotransferase complex
S	0050567	molecular_function	glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
T	0003824	molecular_function	catalytic activity
T	0005524	molecular_function	ATP binding
T	0006412	biological_process	translation
T	0016874	molecular_function	ligase activity
T	0016884	molecular_function	carbon-nitrogen ligase activity, with glutamine as amido-N-donor
T	0050566	molecular_function	asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity
T	0050567	molecular_function	glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
T	0070681	biological_process	glutaminyl-tRNAGln biosynthesis via transamidation
U	0005524	molecular_function	ATP binding
U	0006412	biological_process	translation
U	0006450	biological_process	regulation of translational fidelity
U	0016874	molecular_function	ligase activity
U	0050566	molecular_function	asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity
U	0050567	molecular_function	glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
U	0070681	biological_process	glutaminyl-tRNAGln biosynthesis via transamidation
V	0003824	molecular_function	catalytic activity
V	0005524	molecular_function	ATP binding
V	0006412	biological_process	translation
V	0016874	molecular_function	ligase activity
V	0030956	cellular_component	glutamyl-tRNA(Gln) amidotransferase complex
V	0050567	molecular_function	glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
W	0003824	molecular_function	catalytic activity
W	0005524	molecular_function	ATP binding
W	0006412	biological_process	translation
W	0016874	molecular_function	ligase activity
W	0016884	molecular_function	carbon-nitrogen ligase activity, with glutamine as amido-N-donor
W	0050566	molecular_function	asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity
W	0050567	molecular_function	glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
W	0070681	biological_process	glutaminyl-tRNAGln biosynthesis via transamidation
X	0005524	molecular_function	ATP binding
X	0006412	biological_process	translation
X	0006450	biological_process	regulation of translational fidelity
X	0016874	molecular_function	ligase activity
X	0050566	molecular_function	asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity
X	0050567	molecular_function	glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
X	0070681	biological_process	glutaminyl-tRNAGln biosynthesis via transamidation

Functional Information from PDB Data

site_id	AC1
Number of Residues	13
Details	BINDING SITE FOR RESIDUE ASN A 901

Chain	Residue
A	ALA121
A	TYR302
A	TYR303
A	ARG351
A	ASP418
A	MET122
A	GLY123
A	SER124
A	THR168
A	GLY169
A	GLY170
A	SER171
A	PHE199

site_id	AC2
Number of Residues	12
Details	BINDING SITE FOR RESIDUE ASN D 902

Chain	Residue
D	ALA121
D	MET122
D	GLY123
D	ASP167
D	THR168
D	GLY169
D	GLY170
D	SER171
D	TYR302
D	TYR303
D	ARG351
D	ASP418

site_id	AC3
Number of Residues	13
Details	BINDING SITE FOR RESIDUE ASN G 903

Chain	Residue
G	ALA121
G	GLY123
G	SER124
G	THR168
G	GLY169
G	GLY170
G	SER171
G	PHE199
G	TYR302
G	TYR303
G	ARG351
G	ASP418
G	HOH904

site_id	AC4
Number of Residues	13
Details	BINDING SITE FOR RESIDUE ASN J 904

Chain	Residue
J	ALA121
J	GLY123
J	SER124
J	GLY146
J	SER147
J	THR168
J	GLY169
J	GLY170
J	SER171
J	PHE199
J	TYR302
J	TYR303
J	ARG351

site_id	AC5
Number of Residues	13
Details	BINDING SITE FOR RESIDUE ASN M 905

Chain	Residue
M	ALA121
M	GLY123
M	SER124
M	GLY146
M	THR168
M	GLY169
M	SER171
M	PHE199
M	TYR302
M	TYR303
M	ARG351
M	ASP418
M	HOH906

site_id	AC6
Number of Residues	12
Details	BINDING SITE FOR RESIDUE ASN P 906

Chain	Residue
P	ALA121
P	GLY123
P	SER124
P	THR168
P	GLY169
P	GLY170
P	SER171
P	PHE199
P	TYR302
P	TYR303
P	ARG351
P	ASP418

site_id	AC7
Number of Residues	11
Details	BINDING SITE FOR RESIDUE ASN S 907

Chain	Residue
S	MET122
S	GLY123
S	SER124
S	THR168
S	GLY169
S	SER171
S	PHE199
S	TYR302
S	TYR303
S	ARG351
S	ASP418

site_id	AC8
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN B 901

Chain	Residue
B	CYS25
B	CYS27
B	CYS40
B	CYS43

site_id	AC9
Number of Residues	12
Details	BINDING SITE FOR RESIDUE ASN V 908

Chain	Residue
V	TYR302
V	TYR303
V	ARG351
V	ASP418
V	ALA121
V	MET122
V	GLY123
V	SER124
V	THR168
V	GLY169
V	GLY170
V	SER171

site_id	BC1
Number of Residues	12
Details	BINDING SITE FOR RESIDUE ADP B 479

Chain	Residue
B	VAL8
B	GLY10
B	LEU11
B	GLU12
B	VAL155
B	THR156
B	GLU157
B	PRO158
B	ASN197
B	SER199
B	GLY209
B	ARG211

site_id	BC2
Number of Residues	3
Details	BINDING SITE FOR RESIDUE MN B 480

Chain	Residue
B	HIS14
B	GLU127
B	GLU153

site_id	BC3
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN E 902

Chain	Residue
E	CYS25
E	CYS27
E	CYS40
E	CYS43

site_id	BC4
Number of Residues	3
Details	BINDING SITE FOR RESIDUE MN B 481

Chain	Residue
B	GLU12
B	ASN197
B	GLU213

site_id	BC5
Number of Residues	12
Details	BINDING SITE FOR RESIDUE ATP E 479

Chain	Residue
E	VAL8
E	GLY10
E	GLU12
E	THR156
E	GLU157
E	PRO158
E	ASN197
E	SER199
E	GLY209
E	ARG211
E	MN481
E	HOH482

site_id	BC6
Number of Residues	3
Details	BINDING SITE FOR RESIDUE MN E 480

Chain	Residue
E	HIS14
E	GLU127
E	GLU153

site_id	BC7
Number of Residues	3
Details	BINDING SITE FOR RESIDUE MN E 481

Chain	Residue
E	GLU12
E	GLU213
E	ATP479

site_id	BC8
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN H 903

Chain	Residue
H	CYS25
H	CYS27
H	CYS40
H	CYS43

site_id	BC9
Number of Residues	12
Details	BINDING SITE FOR RESIDUE ATP H 479

Chain	Residue
H	VAL8
H	GLU12
H	VAL155
H	THR156
H	PRO158
H	ASN197
H	SER199
H	GLY209
H	ARG211
H	MN481
H	ASP482
H	HOH483

site_id	CC1
Number of Residues	5
Details	BINDING SITE FOR RESIDUE MN H 480

Chain	Residue
H	HIS14
H	GLU127
H	GLU153
H	ASP482
H	HOH484

site_id	CC2
Number of Residues	4
Details	BINDING SITE FOR RESIDUE MN H 481

Chain	Residue
H	GLU12
H	GLU213
H	ATP479
H	ASP482

site_id	CC3
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN K 904

Chain	Residue
K	CYS25
K	CYS27
K	CYS40
K	CYS43

site_id	CC4
Number of Residues	10
Details	BINDING SITE FOR RESIDUE ASP H 482

Chain	Residue
H	HIS14
H	LYS81
H	GLU153
H	LYS215
H	TYR270
H	ATP479
H	MN480
H	MN481
H	HOH484
H	HOH485

site_id	CC5
Number of Residues	11
Details	BINDING SITE FOR RESIDUE ATP K 479

Chain	Residue
K	VAL8
K	GLY10
K	LEU11
K	GLU12
K	THR156
K	GLU157
K	PRO158
K	ASN197
K	SER199
K	GLY209
K	ARG211

site_id	CC6
Number of Residues	4
Details	BINDING SITE FOR RESIDUE MN K 480

Chain	Residue
K	HIS14
K	GLU127
K	GLU153
K	HOH485

site_id	CC7
Number of Residues	3
Details	BINDING SITE FOR RESIDUE MN K 481

Chain	Residue
K	GLU12
K	GLU213
K	LYS215

site_id	CC8
Number of Residues	14
Details	BINDING SITE FOR RESIDUE ATP N 479

Chain	Residue
N	VAL8
N	GLY10
N	LEU11
N	GLU12
N	VAL155
N	THR156
N	GLU157
N	PRO158
N	ASN197
N	SER199
N	GLY209
N	ARG211
N	ASP482
N	HOH483

site_id	CC9
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN N 905

Chain	Residue
N	CYS25
N	CYS27
N	CYS40
N	CYS43

site_id	DC1
Number of Residues	5
Details	BINDING SITE FOR RESIDUE MN N 480

Chain	Residue
N	HIS14
N	GLU127
N	GLU153
N	ASP482
N	HOH485

site_id	DC2
Number of Residues	3
Details	BINDING SITE FOR RESIDUE MN N 481

Chain	Residue
N	GLU12
N	GLU213
N	ASP482

site_id	DC3
Number of Residues	9
Details	BINDING SITE FOR RESIDUE ASP N 482

Chain	Residue
N	HIS14
N	LYS81
N	GLU153
N	TYR270
N	ATP479
N	MN480
N	MN481
N	HOH484
N	HOH486

site_id	DC4
Number of Residues	12
Details	BINDING SITE FOR RESIDUE ATP Q 479

Chain	Residue
Q	VAL8
Q	GLY10
Q	LEU11
Q	GLU12
Q	THR156
Q	PRO158
Q	ASN197
Q	SER199
Q	GLY209
Q	ARG211
Q	HOH483
Q	HOH484

site_id	DC5
Number of Residues	4
Details	BINDING SITE FOR RESIDUE MN Q 480

Chain	Residue
Q	HIS14
Q	GLU127
Q	GLU153
Q	HOH482

site_id	DC6
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN Q 906

Chain	Residue
Q	CYS25
Q	CYS27
Q	CYS40
Q	CYS43

site_id	DC7
Number of Residues	4
Details	BINDING SITE FOR RESIDUE MN Q 481

Chain	Residue
Q	GLU12
Q	GLU213
Q	LYS215
Q	HOH484

site_id	DC8
Number of Residues	14
Details	BINDING SITE FOR RESIDUE ADP T 479

Chain	Residue
T	VAL8
T	GLY10
T	LEU11
T	GLU12
T	THR156
T	GLU157
T	PRO158
T	ASN197
T	SER199
T	PHE208
T	GLY209
T	ARG211
T	MN481
T	HOH484

site_id	DC9
Number of Residues	5
Details	BINDING SITE FOR RESIDUE MN T 480

Chain	Residue
T	HIS14
T	GLU127
T	GLU153
T	HOH482
T	HOH483

site_id	EC1
Number of Residues	2
Details	BINDING SITE FOR RESIDUE MN T 481

Chain	Residue
T	GLU12
T	ADP479

site_id	EC2
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN T 907

Chain	Residue
T	CYS25
T	CYS27
T	CYS40
T	CYS43

site_id	EC3
Number of Residues	11
Details	BINDING SITE FOR RESIDUE ATP W 479

Chain	Residue
W	VAL8
W	GLY10
W	GLU12
W	VAL155
W	THR156
W	ASN197
W	SER199
W	PHE208
W	GLY209
W	ARG211
W	HOH486

site_id	EC4
Number of Residues	4
Details	BINDING SITE FOR RESIDUE MN W 480

Chain	Residue
W	HIS14
W	GLU127
W	GLU153
W	HOH483

site_id	EC5
Number of Residues	3
Details	BINDING SITE FOR RESIDUE MN W 481

Chain	Residue
W	GLU12
W	ASN197
W	GLU213

site_id	EC6
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN W 908

Chain	Residue
W	CYS25
W	CYS27
W	CYS40
W	CYS43

Functional Information from PROSITE/UniProt

site_id	PS00571
Number of Residues	32
Details	AMIDASES Amidases signature. GGSSGGsAAsVAvlsapvSlGsDtGgSIRqPA

Chain	Residue	Details
A	GLY145-ALA176

site_id	PS01234
Number of Residues	15
Details	GATB Glutamyl-tRNA(Gln) amidotransferase subunit B signature. LNRagtPLMEIvTeP

Chain	Residue	Details
B	LEU144-PRO158

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	16
Details	ACT_SITE: Charge relay system => ECO:0000250

Chain	Residue	Details
A	LYS72
M	SER147
P	LYS72
P	SER147
S	LYS72
S	SER147
V	LYS72
V	SER147
A	SER147
D	LYS72
D	SER147
G	LYS72
G	SER147
J	LYS72
J	SER147
M	LYS72

site_id	SWS_FT_FI2
Number of Residues	8
Details	ACT_SITE: Acyl-ester intermediate => ECO:0000250

Chain	Residue	Details
A	SER171
D	SER171
G	SER171
J	SER171
M	SER171
P	SER171
S	SER171
V	SER171

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)