Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3GZX

Crystal Structure of the Biphenyl Dioxygenase in complex with Biphenyl from Comamonas testosteroni Sp. Strain B-356

Functional Information from GO Data
ChainGOidnamespacecontents
A0005506molecular_functioniron ion binding
A0009056biological_processcatabolic process
A0018687molecular_functionbiphenyl 2,3-dioxygenase activity
A0044237biological_processcellular metabolic process
A0046872molecular_functionmetal ion binding
A0051213molecular_functiondioxygenase activity
A0051537molecular_function2 iron, 2 sulfur cluster binding
B0009056biological_processcatabolic process
B0018687molecular_functionbiphenyl 2,3-dioxygenase activity
B0019380biological_process3-phenylpropionate catabolic process
B0051213molecular_functiondioxygenase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FE2 A 701
ChainResidue
AGLN226
AHIS233
AHIS239
AASP386
AHOH458

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FES A 700
ChainResidue
AHIS123
ATRP125
ACYS100
AHIS102
AARG103
ACYS120

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE BNL A 702
ChainResidue
AGLN226
APHE227
AASP230
AHIS233
AGLY319
AHIS321
ALEU331

site_idAC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 705
ChainResidue
ALEU74
AASP111
AGLY112
AHOH661
AGOL706
AHOH737
AHOH756
BARG62

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 706
ChainResidue
AHIS66
APRO68
ALYS69
AASP72
AGOL705
AHOH818

site_idAC6
Number of Residues11
DetailsBINDING SITE FOR RESIDUE MES B 704
ChainResidue
AASN279
AASN279
AHOH819
BARG118
BARG118
BMET120
BASP121
BASP121
BHOH515
BHOH617
BHOH617

Functional Information from PROSITE/UniProt
site_idPS00570
Number of Residues24
DetailsRING_HYDROXYL_ALPHA Bacterial ring hydroxylating dioxygenases alpha-subunit signature. CrHRGmrivrsdgGNakaftCtYH
ChainResidueDetails
ACYS100-HIS123

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00628
ChainResidueDetails
ACYS100
AHIS102
ACYS120
AHIS123

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AHIS233
AHIS239

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon