Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

3GZT

VP7 recoated rotavirus DLP

Functional Information from GO Data

Chain	GOid	namespace	contents
B	0019028	cellular_component	viral capsid
B	0039621	cellular_component	T=13 icosahedral viral capsid
B	0039624	cellular_component	viral outer capsid
B	0044165	cellular_component	host cell endoplasmic reticulum
B	0044166	cellular_component	host cell endoplasmic reticulum lumen
B	0044423	cellular_component	virion component
B	0046813	biological_process	receptor-mediated virion attachment to host cell
B	0046872	molecular_function	metal ion binding
F	0019028	cellular_component	viral capsid
F	0039621	cellular_component	T=13 icosahedral viral capsid
F	0039624	cellular_component	viral outer capsid
F	0044165	cellular_component	host cell endoplasmic reticulum
F	0044166	cellular_component	host cell endoplasmic reticulum lumen
F	0044423	cellular_component	virion component
F	0046813	biological_process	receptor-mediated virion attachment to host cell
F	0046872	molecular_function	metal ion binding
G	0019028	cellular_component	viral capsid
G	0039621	cellular_component	T=13 icosahedral viral capsid
G	0039624	cellular_component	viral outer capsid
G	0044165	cellular_component	host cell endoplasmic reticulum
G	0044166	cellular_component	host cell endoplasmic reticulum lumen
G	0044423	cellular_component	virion component
G	0046813	biological_process	receptor-mediated virion attachment to host cell
G	0046872	molecular_function	metal ion binding
H	0019028	cellular_component	viral capsid
H	0039621	cellular_component	T=13 icosahedral viral capsid
H	0039624	cellular_component	viral outer capsid
H	0044165	cellular_component	host cell endoplasmic reticulum
H	0044166	cellular_component	host cell endoplasmic reticulum lumen
H	0044423	cellular_component	virion component
H	0046813	biological_process	receptor-mediated virion attachment to host cell
H	0046872	molecular_function	metal ion binding
I	0019028	cellular_component	viral capsid
I	0039621	cellular_component	T=13 icosahedral viral capsid
I	0039624	cellular_component	viral outer capsid
I	0044165	cellular_component	host cell endoplasmic reticulum
I	0044166	cellular_component	host cell endoplasmic reticulum lumen
I	0044423	cellular_component	virion component
I	0046813	biological_process	receptor-mediated virion attachment to host cell
I	0046872	molecular_function	metal ion binding
J	0019028	cellular_component	viral capsid
J	0039621	cellular_component	T=13 icosahedral viral capsid
J	0039624	cellular_component	viral outer capsid
J	0044165	cellular_component	host cell endoplasmic reticulum
J	0044166	cellular_component	host cell endoplasmic reticulum lumen
J	0044423	cellular_component	virion component
J	0046813	biological_process	receptor-mediated virion attachment to host cell
J	0046872	molecular_function	metal ion binding
K	0019028	cellular_component	viral capsid
K	0039621	cellular_component	T=13 icosahedral viral capsid
K	0039624	cellular_component	viral outer capsid
K	0044165	cellular_component	host cell endoplasmic reticulum
K	0044166	cellular_component	host cell endoplasmic reticulum lumen
K	0044423	cellular_component	virion component
K	0046813	biological_process	receptor-mediated virion attachment to host cell
K	0046872	molecular_function	metal ion binding
L	0019028	cellular_component	viral capsid
L	0039621	cellular_component	T=13 icosahedral viral capsid
L	0039624	cellular_component	viral outer capsid
L	0044165	cellular_component	host cell endoplasmic reticulum
L	0044166	cellular_component	host cell endoplasmic reticulum lumen
L	0044423	cellular_component	virion component
L	0046813	biological_process	receptor-mediated virion attachment to host cell
L	0046872	molecular_function	metal ion binding
M	0019028	cellular_component	viral capsid
M	0039621	cellular_component	T=13 icosahedral viral capsid
M	0039624	cellular_component	viral outer capsid
M	0044165	cellular_component	host cell endoplasmic reticulum
M	0044166	cellular_component	host cell endoplasmic reticulum lumen
M	0044423	cellular_component	virion component
M	0046813	biological_process	receptor-mediated virion attachment to host cell
M	0046872	molecular_function	metal ion binding
N	0019028	cellular_component	viral capsid
N	0039621	cellular_component	T=13 icosahedral viral capsid
N	0039624	cellular_component	viral outer capsid
N	0044165	cellular_component	host cell endoplasmic reticulum
N	0044166	cellular_component	host cell endoplasmic reticulum lumen
N	0044423	cellular_component	virion component
N	0046813	biological_process	receptor-mediated virion attachment to host cell
N	0046872	molecular_function	metal ion binding
O	0019028	cellular_component	viral capsid
O	0039621	cellular_component	T=13 icosahedral viral capsid
O	0039624	cellular_component	viral outer capsid
O	0044165	cellular_component	host cell endoplasmic reticulum
O	0044166	cellular_component	host cell endoplasmic reticulum lumen
O	0044423	cellular_component	virion component
O	0046813	biological_process	receptor-mediated virion attachment to host cell
O	0046872	molecular_function	metal ion binding
P	0019028	cellular_component	viral capsid
P	0039621	cellular_component	T=13 icosahedral viral capsid
P	0039624	cellular_component	viral outer capsid
P	0044165	cellular_component	host cell endoplasmic reticulum
P	0044166	cellular_component	host cell endoplasmic reticulum lumen
P	0044423	cellular_component	virion component
P	0046813	biological_process	receptor-mediated virion attachment to host cell
P	0046872	molecular_function	metal ion binding
Q	0019028	cellular_component	viral capsid
Q	0039621	cellular_component	T=13 icosahedral viral capsid
Q	0039624	cellular_component	viral outer capsid
Q	0044165	cellular_component	host cell endoplasmic reticulum
Q	0044166	cellular_component	host cell endoplasmic reticulum lumen
Q	0044423	cellular_component	virion component
Q	0046813	biological_process	receptor-mediated virion attachment to host cell
Q	0046872	molecular_function	metal ion binding

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	26
Details	Region: {"description":"CNP motif; interaction with ITGAV/ITGB3","evidences":[{"source":"HAMAP-Rule","id":"MF_04131","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"15452204","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	26
Details	Region: {"description":"LVD motif; interaction with ITGA4/ITGB1 heterodimer","evidences":[{"source":"HAMAP-Rule","id":"MF_04131","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	26
Details	Region: {"description":"GPR motif; interaction with ITGAX/ITGB2","evidences":[{"source":"HAMAP-Rule","id":"MF_04131","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI4
Number of Residues	78
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_04131","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"19520960","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI5
Number of Residues	39
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_04131","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"19487668","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19520960","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI6
Number of Residues	13
Details	Glycosylation: {"description":"N-linked (GlcNAc...) asparagine; by host","evidences":[{"source":"PubMed","id":"19487668","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"21157433","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)