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3GRV

Crystal Structure of the Complex between Adenosine and Methanocaldococcus jannaschi Dim1

Functional Information from GO Data
ChainGOidnamespacecontents
A0000154biological_processrRNA modification
A0000179molecular_functionrRNA (adenine-N6,N6-)-dimethyltransferase activity
A0003723molecular_functionRNA binding
A0005737cellular_componentcytoplasm
A0006364biological_processrRNA processing
A0008168molecular_functionmethyltransferase activity
A0016433molecular_functionrRNA (adenine) methyltransferase activity
A0031167biological_processrRNA methylation
A0032259biological_processmethylation
Functional Information from PDB Data
site_idAC1
Number of Residues12
DetailsBINDING SITE FOR RESIDUE ADN A 300
ChainResidue
ACYS11
APRO103
AHOH330
AHOH464
AGLY38
AGLY40
AGLU59
AILE60
ALEU64
AASP84
AALA85
AASN101

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 276
ChainResidue
ALYS53
AARG145
AARG200
AHOH493

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 A 277
ChainResidue
APRO182
AASN183
ALYS184
AGLY185
ALYS208
ALYS212
AHOH315
AHOH384

Functional Information from PROSITE/UniProt
site_idPS01131
Number of Residues28
DetailsRRNA_A_DIMETH Ribosomal RNA adenine dimethylases signature. VLEiGLGkGiLTeelAknakk...VyVIEiD
ChainResidueDetails
AVAL34-ASP61

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING:
ChainResidueDetails
ALEU13
AGLU59
AASP84
AASN101

site_idSWS_FT_FI2
Number of Residues1
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00607
ChainResidueDetails
AGLY38

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PDB entries from 2024-07-17

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