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3GP6

Crystal structure of PagP in SDS/MPD

Functional Information from GO Data
ChainGOidnamespacecontents
A0009245biological_processlipid A biosynthetic process
A0009279cellular_componentcell outer membrane
A0016416molecular_functionO-palmitoyltransferase activity
A0016746molecular_functionacyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SDS A 163
ChainResidue
AARG10
ATYR70
AILE84
AARG114
ATRP156

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SDS A 164
ChainResidue
ATYR70
AMPD174
AMPD177
AALA14
ATRP17
AGLN18
APHE55

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SDS A 165
ChainResidue
ATRP93
APRO95
ALEU105
ASER130

site_idAC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SDS A 166
ChainResidue
AILE30
APHE36
ATYR46
APHE101
AVAL131
AGLY132
ATYR133
APRO135
APHE138

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SDS A 167
ChainResidue
ATRP51
ALYS75
ATRP81
ASO4180

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SDS A 168
ChainResidue
ASER91
ALEU105
AGLY106
ASO4179

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MPD A 169
ChainResidue
ALEU105
APRO127
ALEU128
ASO4183
AHOH205
AHOH231

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MPD A 170
ChainResidue
AALA109
APRO121
ALEU122
APRO123
AMPD174

site_idAC9
Number of Residues10
DetailsBINDING SITE FOR RESIDUE MPD A 171
ChainResidue
APRO20
APRO20
AGLU21
AGLU21
AHIS22
ALEU162
ALEU162
ASO4184
ALI185
ALI185

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MPD A 172
ChainResidue
ATRP5
APHE9
AHOH232
AHOH232

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MPD A 173
ChainResidue
AGLY53
AALA71
AMET72
ASO4180
AHOH239

site_idBC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MPD A 174
ChainResidue
AARG10
AILE13
ATRP117
ALEU122
ASDS164
AMPD170

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MPD A 175
ChainResidue
AASP3
AALA97
AASP98
ATYR142

site_idBC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MPD A 176
ChainResidue
AALA113
APRO121
APRO121

site_idBC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MPD A 177
ChainResidue
AASN116
ATRP117
AASN118
ASDS164

site_idBC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MRD A 178
ChainResidue
APHE9
AASN12
ATYR87
ATRP89
APHE107

site_idBC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 179
ChainResidue
APHE107
ALEU125
ALEU126
ASDS168
ASO4183

site_idBC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 180
ChainResidue
AGLY53
AALA73
ATRP81
ASDS167
AMPD173

site_idCC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 A 181
ChainResidue
AHOH233

site_idCC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 182
ChainResidue
ATRP17
ALEU162
ASO4184

site_idCC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 183
ChainResidue
AALA2
APRO127
ATYR142
AMPD169
ASO4179

site_idCC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 184
ChainResidue
ATYR23
AMPD171
ASO4182

site_idCC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE LI A 185
ChainResidue
APRO20
AGLU21
AGLU21
AHIS22
ALEU162
AMPD171
AMPD171

site_idCC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE LI A 186
ChainResidue
AGLU21
AHIS22
AHOH200
AHOH201
AHOH215

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsACT_SITE: ACT_SITE => ECO:0000255|HAMAP-Rule:MF_00837, ECO:0000305|PubMed:12357033, ECO:0000305|PubMed:20826347
ChainResidueDetails
AHIS33
AASP76
ASER77

site_idSWS_FT_FI2
Number of Residues1
DetailsSITE: Role in lipopolysaccharide recognition => ECO:0000255|HAMAP-Rule:MF_00837
ChainResidueDetails
ALYS42

site_idSWS_FT_FI3
Number of Residues1
DetailsSITE: Role in the phospholipid gating => ECO:0000255|HAMAP-Rule:MF_00837
ChainResidueDetails
ATYR147

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PDB entries from 2024-07-17

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