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3GOC

Crystal structure of the Endonuclease V (SAV1684) from Streptomyces avermitilis. Northeast Structural Genomics Consortium Target SvR196

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003727molecular_functionsingle-stranded RNA binding
A0004518molecular_functionnuclease activity
A0004519molecular_functionendonuclease activity
A0005737cellular_componentcytoplasm
A0006281biological_processDNA repair
A0006974biological_processDNA damage response
A0016787molecular_functionhydrolase activity
A0016891molecular_functionRNA endonuclease activity producing 5'-phosphomonoesters, hydrolytic mechanism
A0043737molecular_functiondeoxyribonuclease V activity
A0046872molecular_functionmetal ion binding
B0000287molecular_functionmagnesium ion binding
B0003727molecular_functionsingle-stranded RNA binding
B0004518molecular_functionnuclease activity
B0004519molecular_functionendonuclease activity
B0005737cellular_componentcytoplasm
B0006281biological_processDNA repair
B0006974biological_processDNA damage response
B0016787molecular_functionhydrolase activity
B0016891molecular_functionRNA endonuclease activity producing 5'-phosphomonoesters, hydrolytic mechanism
B0043737molecular_functiondeoxyribonuclease V activity
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 301
ChainResidue
AASP46
AASP217
AMG302
AHOH305
AHOH344
AHOH366

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 302
ChainResidue
AHOH437
AHOH743
AASP46
AASP114
AMG301

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL A 303
ChainResidue
AGLY87
ALEU88
ALEU89
AHIS120
AHOH457

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 301
ChainResidue
BASP46
BASP217
BMG302
BHOH356
BHOH414
BHOH546

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 302
ChainResidue
BASP46
BASP114
BMG301
BHOH425
BHOH544
BHOH646

site_idAC6
Number of Residues12
DetailsBINDING SITE FOR RESIDUE YES B 304
ChainResidue
AALA66
BLEU101
BASP102
BLEU104
BCYS106
BPRO107
BPRO108
BLEU136
BHOH251
BHOH272
BHOH288
BHOH293

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBinding site: {}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsSite: {"description":"Interaction with target DNA","evidences":[{"source":"HAMAP-Rule","id":"MF_00801","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

245663

PDB entries from 2025-12-03

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