3GKN
Insights into the Alkyl Peroxide Reduction Activity of Xanthomonas campestris Bacterioferritin Comigratory Protein from the Trapped Intermediate/Ligand Complex Structures
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0004601 | molecular_function | peroxidase activity |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0008379 | molecular_function | thioredoxin peroxidase activity |
| A | 0016209 | molecular_function | antioxidant activity |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0034599 | biological_process | cellular response to oxidative stress |
| A | 0045454 | biological_process | cell redox homeostasis |
| A | 0098869 | biological_process | cellular oxidant detoxification |
| A | 0140824 | molecular_function | thioredoxin-dependent peroxiredoxin activity |
| B | 0004601 | molecular_function | peroxidase activity |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0008379 | molecular_function | thioredoxin peroxidase activity |
| B | 0016209 | molecular_function | antioxidant activity |
| B | 0016491 | molecular_function | oxidoreductase activity |
| B | 0034599 | biological_process | cellular response to oxidative stress |
| B | 0045454 | biological_process | cell redox homeostasis |
| B | 0098869 | biological_process | cellular oxidant detoxification |
| B | 0140824 | molecular_function | thioredoxin-dependent peroxiredoxin activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE BIH A 527 |
| Chain | Residue |
| A | PRO41 |
| B | GLU131 |
| B | HOH223 |
| A | MET113 |
| A | ARG123 |
| A | HOH405 |
| A | GOL530 |
| B | ARG28 |
| B | ALA31 |
| B | GLY32 |
| B | PRO130 |
| site_id | AC2 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE GOL A 529 |
| Chain | Residue |
| A | LEU6 |
| A | GLU7 |
| A | LEU8 |
| A | GLY132 |
| A | GLN133 |
| A | VAL134 |
| A | HOH182 |
| A | HOH318 |
| B | ASN112 |
| site_id | AC3 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL A 530 |
| Chain | Residue |
| A | LYS109 |
| A | LYS111 |
| A | GLY120 |
| A | ILE121 |
| A | GLU122 |
| A | HOH348 |
| A | HOH452 |
| A | BIH527 |
| site_id | AC4 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE GOL A 532 |
| Chain | Residue |
| A | VAL5 |
| A | LEU6 |
| A | GLN24 |
| A | VAL134 |
| A | ALA137 |
| A | HOH191 |
| A | HOH219 |
| A | HOH401 |
| A | HOH447 |
| A | HOH525 |
| site_id | AC5 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE GOL A 533 |
| Chain | Residue |
| A | GLU99 |
| A | ARG103 |
| A | ILE108 |
| A | LEU119 |
| A | HOH328 |
| site_id | AC6 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE GOL A 534 |
| Chain | Residue |
| A | SER76 |
| A | LYS78 |
| site_id | AC7 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 A 535 |
| Chain | Residue |
| A | LYS116 |
| A | VAL118 |
| A | HOH268 |
| B | ARG28 |
| B | LYS142 |
| site_id | AC8 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 A 539 |
| Chain | Residue |
| A | PRO9 |
| A | ALA10 |
| A | HOH162 |
| A | HOH289 |
| A | HOH412 |
| site_id | AC9 |
| Number of Residues | 12 |
| Details | BINDING SITE FOR RESIDUE BIH B 528 |
| Chain | Residue |
| B | MET1 |
| B | THR2 |
| B | LEU19 |
| B | SER20 |
| B | LYS68 |
| B | GLY88 |
| B | PHE89 |
| B | ALA90 |
| B | PHE91 |
| B | PRO92 |
| B | HOH251 |
| B | HOH496 |
| site_id | BC1 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL B 531 |
| Chain | Residue |
| B | ASP54 |
| B | ALA144 |
| B | GLY145 |
| B | ASP148 |
| B | HOH208 |
| B | HOH459 |
| B | HOH491 |
| site_id | BC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 B 536 |
| Chain | Residue |
| B | PRO41 |
| B | LYS42 |
| B | GLY120 |
| B | ILE121 |
| B | HOH425 |
| B | HOH478 |
| site_id | BC3 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE SO4 B 537 |
| Chain | Residue |
| B | ARG123 |
| B | HOH263 |
| site_id | BC4 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 B 538 |
| Chain | Residue |
| B | THR49 |
| B | HIS80 |
| B | ASP81 |
| B | ASN82 |
| site_id | BC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 B 540 |
| Chain | Residue |
| B | ASP3 |
| B | ALA137 |
| B | ARG139 |
| B | HOH211 |
| B | HOH232 |
| B | HOH308 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 155 |
| Details | Domain: {"description":"Thioredoxin","evidences":[{"source":"PROSITE-ProRule","id":"PRU00691","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 2 |
| Details | Active site: {"description":"Cysteine sulfenic acid (-SOH) intermediate","evidences":[{"source":"PubMed","id":"19477183","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"27594682","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
