3GFS

Structure of YhdA, K109D/D137K variant

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0005829	cellular_component	cytosol
A	0010181	molecular_function	FMN binding
A	0016491	molecular_function	oxidoreductase activity
A	0042802	molecular_function	identical protein binding
B	0005829	cellular_component	cytosol
B	0010181	molecular_function	FMN binding
B	0016491	molecular_function	oxidoreductase activity
B	0042802	molecular_function	identical protein binding
C	0005829	cellular_component	cytosol
C	0010181	molecular_function	FMN binding
C	0016491	molecular_function	oxidoreductase activity
C	0042802	molecular_function	identical protein binding
D	0005829	cellular_component	cytosol
D	0010181	molecular_function	FMN binding
D	0016491	molecular_function	oxidoreductase activity
D	0042802	molecular_function	identical protein binding
E	0005829	cellular_component	cytosol
E	0010181	molecular_function	FMN binding
E	0016491	molecular_function	oxidoreductase activity
E	0042802	molecular_function	identical protein binding
F	0005829	cellular_component	cytosol
F	0010181	molecular_function	FMN binding
F	0016491	molecular_function	oxidoreductase activity
F	0042802	molecular_function	identical protein binding
G	0005829	cellular_component	cytosol
G	0010181	molecular_function	FMN binding
G	0016491	molecular_function	oxidoreductase activity
G	0042802	molecular_function	identical protein binding
H	0005829	cellular_component	cytosol
H	0010181	molecular_function	FMN binding
H	0016491	molecular_function	oxidoreductase activity
H	0042802	molecular_function	identical protein binding
I	0005829	cellular_component	cytosol
I	0010181	molecular_function	FMN binding
I	0016491	molecular_function	oxidoreductase activity
I	0042802	molecular_function	identical protein binding
J	0005829	cellular_component	cytosol
J	0010181	molecular_function	FMN binding
J	0016491	molecular_function	oxidoreductase activity
J	0042802	molecular_function	identical protein binding
K	0005829	cellular_component	cytosol
K	0010181	molecular_function	FMN binding
K	0016491	molecular_function	oxidoreductase activity
K	0042802	molecular_function	identical protein binding
L	0005829	cellular_component	cytosol
L	0010181	molecular_function	FMN binding
L	0016491	molecular_function	oxidoreductase activity
L	0042802	molecular_function	identical protein binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	17
Details	BINDING SITE FOR RESIDUE FMN A 200

Chain	Residue
A	THR9
A	SER76
A	VAL104
A	ALA105
A	GLY106
A	GLY107
A	GLY110
A	HOH281
C	ASP87
A	ARG11
A	GLY14
A	ARG15
A	THR16
A	PRO72
A	GLU73
A	TYR74
A	HIS75

---

site_id	AC2
Number of Residues	16
Details	BINDING SITE FOR RESIDUE FMN B 200

Chain	Residue
B	THR9
B	ARG11
B	GLY14
B	ARG15
B	THR16
B	PRO72
B	GLU73
B	TYR74
B	HIS75
B	SER76
B	VAL104
B	ALA105
B	GLY106
B	GLY107
B	GLY110
D	ASP87

---

site_id	AC3
Number of Residues	19
Details	BINDING SITE FOR RESIDUE FMN C 200

Chain	Residue
A	ASP87
C	THR9
C	ARG11
C	GLY14
C	ARG15
C	THR16
C	PRO72
C	GLU73
C	TYR74
C	HIS75
C	SER76
C	VAL104
C	ALA105
C	GLY106
C	GLY107
C	GLY110
C	HOH576
C	HOH616
F	GLU50

---

site_id	AC4
Number of Residues	17
Details	BINDING SITE FOR RESIDUE FMN D 200

Chain	Residue
B	ASP87
D	THR9
D	ARG11
D	GLY14
D	ARG15
D	THR16
D	PRO72
D	GLU73
D	TYR74
D	HIS75
D	SER76
D	VAL104
D	ALA105
D	GLY106
D	GLY110
D	HOH312
E	HOH529

---

site_id	AC5
Number of Residues	17
Details	BINDING SITE FOR RESIDUE FMN E 200

Chain	Residue
E	THR9
E	ARG11
E	GLY14
E	ARG15
E	THR16
E	PRO72
E	GLU73
E	TYR74
E	HIS75
E	SER76
E	VAL104
E	ALA105
E	GLY106
E	GLY107
E	GLY110
E	HOH581
F	ASP87

---

site_id	AC6
Number of Residues	17
Details	BINDING SITE FOR RESIDUE FMN F 200

Chain	Residue
F	GLY106
F	GLY107
F	GLY110
F	HOH482
E	ASP87
F	THR9
F	ARG11
F	GLY14
F	ARG15
F	THR16
F	PRO72
F	GLU73
F	TYR74
F	HIS75
F	SER76
F	VAL104
F	ALA105

---

site_id	AC7
Number of Residues	16
Details	BINDING SITE FOR RESIDUE FMN G 200

Chain	Residue
G	THR9
G	ARG11
G	GLY14
G	ARG15
G	THR16
G	PRO72
G	GLU73
G	TYR74
G	HIS75
G	SER76
G	VAL104
G	ALA105
G	GLY106
G	GLY110
G	HOH394
H	ASP87

---

site_id	AC8
Number of Residues	18
Details	BINDING SITE FOR RESIDUE FMN H 200

Chain	Residue
G	ASP87
H	THR9
H	ARG11
H	GLY14
H	ARG15
H	THR16
H	PRO72
H	GLU73
H	TYR74
H	HIS75
H	SER76
H	VAL104
H	ALA105
H	GLY106
H	GLY107
H	GLY110
H	HOH692
H	HOH940

---

site_id	AC9
Number of Residues	18
Details	BINDING SITE FOR RESIDUE FMN I 200

Chain	Residue
I	THR9
I	ARG11
I	GLY14
I	ARG15
I	THR16
I	PRO72
I	GLU73
I	TYR74
I	HIS75
I	SER76
I	VAL104
I	ALA105
I	GLY106
I	GLY107
I	GLY110
I	HOH422
I	HOH463
J	ASP87

---

site_id	BC1
Number of Residues	17
Details	BINDING SITE FOR RESIDUE FMN J 200

Chain	Residue
I	ASP87
J	THR9
J	ARG11
J	GLY14
J	ARG15
J	THR16
J	PRO72
J	GLU73
J	TYR74
J	HIS75
J	SER76
J	VAL104
J	ALA105
J	GLY106
J	GLY107
J	GLY110
J	HOH708

---

site_id	BC2
Number of Residues	15
Details	BINDING SITE FOR RESIDUE FMN K 200

Chain	Residue
K	THR9
K	ARG11
K	GLY14
K	ARG15
K	THR16
K	PRO72
K	GLU73
K	TYR74
K	HIS75
K	SER76
K	VAL104
K	ALA105
K	GLY106
K	GLY107
L	ASP87

---

site_id	BC3
Number of Residues	17
Details	BINDING SITE FOR RESIDUE FMN L 200

Chain	Residue
K	ASP87
L	THR9
L	ARG11
L	GLY14
L	ARG15
L	THR16
L	PRO72
L	GLU73
L	TYR74
L	HIS75
L	SER76
L	VAL104
L	ALA105
L	GLY106
L	GLY107
L	GLY110
L	HOH528

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	84
Details	Binding site: {"evidences":[{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"JAN-2005","submissionDatabase":"PDB data bank","title":"Azobenzene reductase from Bacillus subtilis.","authoringGroup":["Midwest center for structural genomics (MCSG)"]}},{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"MAR-2008","submissionDatabase":"PDB data bank","title":"Crystal structure of the putative NADPH-dependent azobenzene FMN-reductase yhdA from Bacillus subtilis, Northeast structural genomics target SR135.","authoringGroup":["Northeast structural genomics consortium (NESG)"]}}]}

Chain

Residue

Details

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