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3GA6

Mth0212 in complex with two DNA helices

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003824molecular_functioncatalytic activity
A0003906molecular_functionDNA-(apurinic or apyrimidinic site) endonuclease activity
A0004518molecular_functionnuclease activity
A0004519molecular_functionendonuclease activity
A0006281biological_processDNA repair
A0006284biological_processbase-excision repair
A0008081molecular_functionphosphoric diester hydrolase activity
A0008311molecular_functiondouble-stranded DNA 3'-5' DNA exonuclease activity
A0016787molecular_functionhydrolase activity
A0016829molecular_functionlyase activity
A0046872molecular_functionmetal ion binding
A0140078molecular_functionclass I DNA-(apurinic or apyrimidinic site) endonuclease activity
B0003677molecular_functionDNA binding
B0003824molecular_functioncatalytic activity
B0003906molecular_functionDNA-(apurinic or apyrimidinic site) endonuclease activity
B0004518molecular_functionnuclease activity
B0004519molecular_functionendonuclease activity
B0006281biological_processDNA repair
B0006284biological_processbase-excision repair
B0008081molecular_functionphosphoric diester hydrolase activity
B0008311molecular_functiondouble-stranded DNA 3'-5' DNA exonuclease activity
B0016787molecular_functionhydrolase activity
B0016829molecular_functionlyase activity
B0046872molecular_functionmetal ion binding
B0140078molecular_functionclass I DNA-(apurinic or apyrimidinic site) endonuclease activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 7002
ChainResidue
AVAL1088
AALA1131
AGLU1134
BARG2090
BHOH9027

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 7004
ChainResidue
AMET1027
AGLU1054
AGLY1055
ALYS1076

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 7006
ChainResidue
ALEU1004
AILE1033
AVAL1077
APHE1102
ANA7401

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 7010
ChainResidue
ALYS1020
AASP1242
AMET1244
AHOH9105

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 7012
ChainResidue
AVAL1176
AALA1179
ATRP1180
ALYS1183
AHOH9199
AHOH9219

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 7013
ChainResidue
AHOH459
ALYS1183
AGLU1186
AASN1187
BGLU2054
BHOH9172

site_idAC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 7015
ChainResidue
APRO1043
AGLU1044
ALEU1046
AARG1051
BGLU2228
BGLU2229
BHOH9174

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 7020
ChainResidue
AGLY1055
ATYR1056
AARG1057
ALYS1076
BASP2182
BGLU2186

site_idAC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL A 7024
ChainResidue
AASP1103
AASP1104

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 7030
ChainResidue
AARG1090
AGLU1120
ALYS1123
ATYR1124
AGLU1127
BARG2138

site_idBC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 7031
ChainResidue
AHOH443
AILE1185
ATYR1189
AVAL1190
AASP1191
AARG1194
AHOH9268

site_idBC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA A 7401
ChainResidue
AASP1032
ATHR1075
ALYS1076
AVAL1077
AGOL7006
AHOH9008

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 7003
ChainResidue
BGLU2094
BGLU2120
BARG2121
BHOH9353

site_idBC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL B 7011
ChainResidue
AGLY1087
AVAL1088
AGLU1089
BGLY2087
BVAL2088
BGLU2089
BASP2092
BHOH9144
BHOH9194

site_idBC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL B 7021
ChainResidue
BGLU2158
BILE2159
BLEU2161
BPRO2164
BPRO2200
BHOH9118
BHOH9167
BHOH9306

site_idBC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL B 7022
ChainResidue
BASN2114
BLYS2116
BLYS2125
BASN2153
BSER2171
BGLY2172
BLEU2221
BHOH9222

site_idBC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 7027
ChainResidue
BPRO2062
BGLU2084
BHOH9090
BHOH9109

site_idBC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 7032
ChainResidue
BPRO2175
BHOH9014
BSER2168
BASN2169

site_idCC1
Number of Residues11
DetailsBINDING SITE FOR RESIDUE GOL B 7033
ChainResidue
BASP2191
BTHR2192
BPHE2193
BARG2220
BASP2222
BTYR2223
BPHE2224
BTRP2238
BILE2239
BILE2251
BHOH9377

site_idCC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PO4 B 7204
ChainResidue
BLEU2082
BARG2083

site_idCC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 B 7205
ChainResidue
BASP2104
BLYS2233
BILE2255
BGLU2256

Functional Information from PROSITE/UniProt
site_idPS00726
Number of Residues10
DetailsAP_NUCLEASE_F1_1 AP endonucleases family 1 signature 1. PDILCLQEIK
ChainResidueDetails
APRO1031-LYS1040

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor/acceptor => ECO:0000305|PubMed:20434457
ChainResidueDetails
AASN1151
BASN2151

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:20434457, ECO:0000269|Ref.7
ChainResidueDetails
AASN1012
AGLU1038
BASN2012
BGLU2038

site_idSWS_FT_FI3
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:20434457
ChainResidueDetails
AASN1151
AASN1153
AHIS1248
BASN2151
BASN2153
BHIS2248

223790

PDB entries from 2024-08-14

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