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3G8F

Crystal structure of the complex formed between a group II phospholipase A2 and designed peptide inhibitor carbobenzoxy-dehydro-val-ala-arg-ser at 1.2 A resolution

Replaces:  1TJQ
Functional Information from GO Data
ChainGOidnamespacecontents
A0004623molecular_functionphospholipase A2 activity
A0005509molecular_functioncalcium ion binding
A0005543molecular_functionphospholipid binding
A0005576cellular_componentextracellular region
A0006644biological_processphospholipid metabolic process
A0016042biological_processlipid catabolic process
A0016787molecular_functionhydrolase activity
A0035821biological_processmodulation of process of another organism
A0042130biological_processnegative regulation of T cell proliferation
A0046872molecular_functionmetal ion binding
A0047498molecular_functioncalcium-dependent phospholipase A2 activity
A0050482biological_processarachidonic acid secretion
A0090729molecular_functiontoxin activity
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 135
ChainResidue
AARG43
AHOH1084
AHOH1094

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 136
ChainResidue
AHOH1097
AGLU4
AARG72
ALYS74
AHOH1061
AHOH1070
AHOH1075

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 137
ChainResidue
ASER114
ALYS115
ALYS131

site_idAC4
Number of Residues17
DetailsBINDING SITE FOR CHAIN B OF PHQ VAL ALA ARG SER PEPTIDE
ChainResidue
ALEU2
AGLY30
ATRP31
AHIS48
AASP49
ATYR52
ALYS69
AASN111
ATHR112
AHOH1144
AHOH1162
AHOH1171
AHOH1176
AHOH1186
BHOH1122
BHOH1163
BHOH1200

Functional Information from PROSITE/UniProt
site_idPS00118
Number of Residues8
DetailsPA2_HIS Phospholipase A2 histidine active site. CCFvHDcC
ChainResidueDetails
ACYS44-CYS51

site_idPS00119
Number of Residues11
DetailsPA2_ASP Phospholipase A2 aspartic acid active site. ICECDKAAaIC
ChainResidueDetails
AILE95-CYS105

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: ACT_SITE => ECO:0000250|UniProtKB:P14418
ChainResidueDetails
AHIS48
AASP99

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|Ref.12, ECO:0007744|PDB:1TGM
ChainResidueDetails
ATYR28
AGLY30
AGLY32
AASP49

Catalytic Information from CSA
site_idCSA1
Number of Residues3
DetailsAnnotated By Reference To The Literature 1n29
ChainResidueDetails
AHIS48
AGLY30
AASP99

222926

PDB entries from 2024-07-24

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