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3G5P

Structure and activity of human mitochondrial peptide deformylase, a novel cancer target

Functional Information from GO Data
ChainGOidnamespacecontents
A0042586molecular_functionpeptide deformylase activity
B0042586molecular_functionpeptide deformylase activity
C0042586molecular_functionpeptide deformylase activity
D0042586molecular_functionpeptide deformylase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CO C 1
ChainResidue
CGLN57
CCYS114
CHIS156
CHIS160
CPO4187

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CO D 2
ChainResidue
DPO4187
DGLN57
DCYS114
DHIS156
DHIS160

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CO A 186
ChainResidue
APO42
AGLN57
ACYS114
AHIS156
AHIS160

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CO B 186
ChainResidue
BGLN57
BCYS114
BHIS156
BHIS160
BPO4188

site_idAC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PO4 A 1
ChainResidue
APO42
ACYS50
AVAL51
AGLY52
AILE153
AHOH323
AHOH342
AHOH359
AHOH391

site_idAC6
Number of Residues11
DetailsBINDING SITE FOR RESIDUE PO4 A 2
ChainResidue
APO41
AGLY52
ALEU53
AGLN57
ACYS114
AGLU115
AHIS156
AGLU157
AHIS160
ACO186
AHOH342

site_idAC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PO4 B 187
ChainResidue
BCYS50
BVAL51
BGLY52
BILE153
BPO4188
BHOH317
BHOH319
BHOH347

site_idAC8
Number of Residues11
DetailsBINDING SITE FOR RESIDUE PO4 B 188
ChainResidue
BGLY52
BLEU53
BGLN57
BCYS114
BGLU115
BHIS156
BGLU157
BHIS160
BCO186
BPO4187
BHOH317

site_idAC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PO4 C 186
ChainResidue
CCYS50
CVAL51
CGLY52
CPO4187
CHOH302
CHOH328
CHOH335

site_idBC1
Number of Residues11
DetailsBINDING SITE FOR RESIDUE PO4 C 187
ChainResidue
CCO1
CGLY52
CLEU53
CGLN57
CCYS114
CGLU115
CHIS156
CGLU157
CHIS160
CPO4186
CHOH328

site_idBC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PO4 D 186
ChainResidue
DCYS50
DVAL51
DGLY52
DPO4187
DHOH275
DHOH321
DHOH322

site_idBC3
Number of Residues11
DetailsBINDING SITE FOR RESIDUE PO4 D 187
ChainResidue
DCO2
DGLY52
DLEU53
DGLN57
DCYS114
DGLU115
DHIS156
DGLU157
DHIS160
DPO4186
DHOH321

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues40
DetailsRegion: {"description":"Hydrophobic dimerization interface","evidences":[{"source":"PubMed","id":"19236878","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues4
DetailsActive site: {"evidences":[{"source":"UniProtKB","id":"P0A6K3","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues24
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"19236878","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

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PDB entries from 2026-01-21

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