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3G5K

Structure and activity of human mitochondrial peptide deformylase, a novel cancer target

Functional Information from GO Data
ChainGOidnamespacecontents
A0042586molecular_functionpeptide deformylase activity
B0042586molecular_functionpeptide deformylase activity
C0042586molecular_functionpeptide deformylase activity
D0042586molecular_functionpeptide deformylase activity
Functional Information from PDB Data
site_idAC1
Number of Residues16
DetailsBINDING SITE FOR RESIDUE BB2 A 1001
ChainResidue
ACYS50
ATRP149
AARG152
AHIS156
AGLU157
AHIS160
ACO1002
AHOH1061
AVAL51
AGLY52
AGLN57
APRO111
AGLU112
AGLY113
ACYS114
AGLU115

site_idAC2
Number of Residues18
DetailsBINDING SITE FOR RESIDUE BB2 B 1002
ChainResidue
BCYS50
BVAL51
BGLY52
BGLN57
BARG85
BPRO111
BGLU112
BGLY113
BCYS114
BGLU115
BTRP149
BARG152
BHIS156
BGLU157
BHIS160
BCO1003
BHOH1069
BHOH1085

site_idAC3
Number of Residues18
DetailsBINDING SITE FOR RESIDUE BB2 C 1003
ChainResidue
CCO1
CCYS50
CVAL51
CGLY52
CGLN57
CARG85
CPRO111
CGLU112
CGLY113
CCYS114
CGLU115
CLEU121
CTRP149
CARG152
CHIS156
CGLU157
CHIS160
CHOH1065

site_idAC4
Number of Residues15
DetailsBINDING SITE FOR RESIDUE BB2 D 1004
ChainResidue
DCO2
DCYS50
DVAL51
DGLY52
DGLN57
DPRO111
DGLU112
DGLY113
DCYS114
DGLU115
DTRP149
DHIS156
DGLU157
DHIS160
DHOH1117

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CO C 1
ChainResidue
CGLN57
CCYS114
CHIS156
CHIS160
CBB21003

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CO D 2
ChainResidue
DGLN57
DCYS114
DHIS156
DHIS160
DBB21004

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CO A 1002
ChainResidue
AGLN57
ACYS114
AHIS156
AHIS160
ABB21001

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CO B 1003
ChainResidue
BGLN57
BCYS114
BHIS156
BHIS160
BBB21002

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues40
DetailsRegion: {"description":"Hydrophobic dimerization interface","evidences":[{"source":"PubMed","id":"19236878","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues4
DetailsActive site: {"evidences":[{"source":"UniProtKB","id":"P0A6K3","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues24
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"19236878","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

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PDB entries from 2026-03-18

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