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3G3C

Mth0212 (WT) in complex with a 6bp dsDNA containing a single one nucleotide long 3'-overhang

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003824molecular_functioncatalytic activity
A0003906molecular_functionDNA-(apurinic or apyrimidinic site) endonuclease activity
A0004518molecular_functionnuclease activity
A0004519molecular_functionendonuclease activity
A0006281biological_processDNA repair
A0006284biological_processbase-excision repair
A0008081molecular_functionphosphoric diester hydrolase activity
A0008311molecular_functiondouble-stranded DNA 3'-5' DNA exonuclease activity
A0016787molecular_functionhydrolase activity
A0016829molecular_functionlyase activity
A0046872molecular_functionmetal ion binding
A0140078molecular_functionclass I DNA-(apurinic or apyrimidinic site) endonuclease activity
B0003677molecular_functionDNA binding
B0003824molecular_functioncatalytic activity
B0003906molecular_functionDNA-(apurinic or apyrimidinic site) endonuclease activity
B0004518molecular_functionnuclease activity
B0004519molecular_functionendonuclease activity
B0006281biological_processDNA repair
B0006284biological_processbase-excision repair
B0008081molecular_functionphosphoric diester hydrolase activity
B0008311molecular_functiondouble-stranded DNA 3'-5' DNA exonuclease activity
B0016787molecular_functionhydrolase activity
B0016829molecular_functionlyase activity
B0046872molecular_functionmetal ion binding
B0140078molecular_functionclass I DNA-(apurinic or apyrimidinic site) endonuclease activity
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PO4 B 266
ChainResidue
BGLU38
BTYR111
BASP151
BASN153
BHIS248
BMG267
HDA7

site_idAC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PO4 A 266
ChainResidue
AASP151
AASN153
AHIS248
AMG267
AHOH271
IDG9
AGLU38
ATYR111

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 267
ChainResidue
BASN10
BASN12
BGLU38
BASP247
BPO4266
HDA7

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 267
ChainResidue
AASN12
AGLU38
AASP247
APO4266
IDG9

site_idAC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MRD A 268
ChainResidue
AARG157

Functional Information from PROSITE/UniProt
site_idPS00726
Number of Residues10
DetailsAP_NUCLEASE_F1_1 AP endonucleases family 1 signature 1. PDILCLQEIK
ChainResidueDetails
APRO31-LYS40

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor/acceptor => ECO:0000305|PubMed:20434457
ChainResidueDetails
AASP151
BASP151

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:20434457, ECO:0000269|Ref.7
ChainResidueDetails
AASN12
AGLU38
BASN12
BGLU38

site_idSWS_FT_FI3
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:20434457
ChainResidueDetails
AASP151
AASN153
AHIS248
BASP151
BASN153
BHIS248

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PDB entries from 2024-10-16

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