3G1Z
Structure of IDP01693/yjeA, a potential t-RNA synthetase from Salmonella typhimurium
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000049 | molecular_function | tRNA binding |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0004812 | molecular_function | aminoacyl-tRNA ligase activity |
| A | 0004824 | molecular_function | lysine-tRNA ligase activity |
| A | 0005524 | molecular_function | ATP binding |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0006418 | biological_process | tRNA aminoacylation for protein translation |
| A | 0006430 | biological_process | lysyl-tRNA aminoacylation |
| A | 0016874 | molecular_function | ligase activity |
| A | 0016880 | molecular_function | acid-ammonia (or amide) ligase activity |
| B | 0000049 | molecular_function | tRNA binding |
| B | 0000166 | molecular_function | nucleotide binding |
| B | 0004812 | molecular_function | aminoacyl-tRNA ligase activity |
| B | 0004824 | molecular_function | lysine-tRNA ligase activity |
| B | 0005524 | molecular_function | ATP binding |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0006418 | biological_process | tRNA aminoacylation for protein translation |
| B | 0006430 | biological_process | lysyl-tRNA aminoacylation |
| B | 0016874 | molecular_function | ligase activity |
| B | 0016880 | molecular_function | acid-ammonia (or amide) ligase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 19 |
| Details | BINDING SITE FOR RESIDUE AMP A 401 |
| Chain | Residue |
| A | ARG100 |
| A | ALA246 |
| A | ASN247 |
| A | ALA298 |
| A | GLY300 |
| A | ARG303 |
| A | LEU314 |
| A | PO4328 |
| A | HOH507 |
| A | HOH558 |
| A | HOH750 |
| A | GLU102 |
| A | HIS107 |
| A | HIS108 |
| A | ASN109 |
| A | PHE112 |
| A | MET114 |
| A | GLU244 |
| A | LEU245 |
| site_id | AC2 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE PO4 A 326 |
| Chain | Residue |
| A | GLY105 |
| A | ARG106 |
| A | HIS107 |
| A | HIS108 |
| A | HOH441 |
| A | HOH660 |
| A | HOH682 |
| site_id | AC3 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE PO4 A 327 |
| Chain | Residue |
| A | TYR125 |
| A | HIS214 |
| A | SER226 |
| A | GLU228 |
| A | GLU234 |
| A | HOH629 |
| A | HOH696 |
| A | HOH815 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE PO4 A 328 |
| Chain | Residue |
| A | HIS108 |
| A | GLU244 |
| A | ARG303 |
| A | AMP401 |
| A | HOH841 |
| site_id | AC5 |
| Number of Residues | 18 |
| Details | BINDING SITE FOR RESIDUE AMP B 401 |
| Chain | Residue |
| B | ARG100 |
| B | GLU102 |
| B | HIS107 |
| B | HIS108 |
| B | ASN109 |
| B | PHE112 |
| B | MET114 |
| B | GLU244 |
| B | LEU245 |
| B | ALA246 |
| B | ASN247 |
| B | GLY300 |
| B | ARG303 |
| B | LEU314 |
| B | PO4328 |
| B | HOH475 |
| B | HOH752 |
| B | HOH754 |
| site_id | AC6 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE PO4 B 326 |
| Chain | Residue |
| B | GLY105 |
| B | ARG106 |
| B | HIS107 |
| B | HIS108 |
| site_id | AC7 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE PO4 B 327 |
| Chain | Residue |
| B | TYR125 |
| B | HIS214 |
| B | SER226 |
| B | GLU228 |
| B | GLU234 |
| B | HOH429 |
| B | HOH620 |
| site_id | AC8 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE PO4 B 328 |
| Chain | Residue |
| B | HIS108 |
| B | GLU244 |
| B | ARG303 |
| B | AMP401 |
| B | HOH752 |
| site_id | AC9 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CL B 329 |
| Chain | Residue |
| B | ARG33 |
| B | HOH399 |
| B | HOH627 |
| B | HOH629 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 10 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00174","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 8 |
| Details | Binding site: {} |
| Chain | Residue | Details |
Catalytic Information from CSA
| site_id | CSA1 |
| Number of Residues | 3 |
| Details | Annotated By Reference To The Literature 1asy |
| Chain | Residue | Details |
| A | ARG100 | |
| A | GLU116 | |
| A | ARG303 |
| site_id | CSA2 |
| Number of Residues | 3 |
| Details | Annotated By Reference To The Literature 1asy |
| Chain | Residue | Details |
| B | ARG100 | |
| B | GLU116 | |
| B | ARG303 |
| site_id | CSA3 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1asy |
| Chain | Residue | Details |
| A | ARG100 |
| site_id | CSA4 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1asy |
| Chain | Residue | Details |
| B | ARG100 |
