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3FYD

Crystal Structure of Dim1 from the thermophilic archeon, Methanocaldococcus jannaschi

Functional Information from GO Data
ChainGOidnamespacecontents
A0000154biological_processrRNA modification
A0000179molecular_functionrRNA (adenine-N6,N6-)-dimethyltransferase activity
A0003723molecular_functionRNA binding
A0005737cellular_componentcytoplasm
A0006364biological_processrRNA processing
A0008168molecular_functionmethyltransferase activity
A0016433molecular_functionrRNA (adenine) methyltransferase activity
A0016740molecular_functiontransferase activity
A0031167biological_processrRNA methylation
A0032259biological_processmethylation
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 1
ChainResidue
ALYS53
AARG145
AHOH492

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 3
ChainResidue
AHOH512
APRO182
AASN183
ALYS184
AGLY185
ALYS208
ALYS212

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 4
ChainResidue
AASN260
AASN263
AARG267

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 5
ChainResidue
ATYR128
ALYS132
ALYS161

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 6
ChainResidue
ALYS181
AASN207
ALYS249
AHOH502

Functional Information from PROSITE/UniProt
site_idPS01131
Number of Residues28
DetailsRRNA_A_DIMETH Ribosomal RNA adenine dimethylases signature. VLEiGLGkGiLTeelAknakk...VyVIEiD
ChainResidueDetails
AVAL34-ASP61

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING:
ChainResidueDetails
ALEU13
AGLU59
AASP84
AASN101

site_idSWS_FT_FI2
Number of Residues1
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00607
ChainResidueDetails
AGLY38

Catalytic Information from CSA
site_idCSA1
Number of Residues3
DetailsAnnotated By Reference To The Literature 1qam
ChainResidueDetails
AGLY38
AASN101
AGLU59

222036

PDB entries from 2024-07-03

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