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3FY4

(6-4) Photolyase Crystal Structure

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003677molecular_functionDNA binding
A0003914molecular_functionDNA (6-4) photolyase activity
A0006139biological_processnucleobase-containing compound metabolic process
A0006281biological_processDNA repair
A0006290biological_processpyrimidine dimer repair
A0009411biological_processresponse to UV
A0016829molecular_functionlyase activity
B0000166molecular_functionnucleotide binding
B0003677molecular_functionDNA binding
B0003914molecular_functionDNA (6-4) photolyase activity
B0006139biological_processnucleobase-containing compound metabolic process
B0006281biological_processDNA repair
B0006290biological_processpyrimidine dimer repair
B0009411biological_processresponse to UV
B0016829molecular_functionlyase activity
C0000166molecular_functionnucleotide binding
C0003677molecular_functionDNA binding
C0003914molecular_functionDNA (6-4) photolyase activity
C0006139biological_processnucleobase-containing compound metabolic process
C0006281biological_processDNA repair
C0006290biological_processpyrimidine dimer repair
C0009411biological_processresponse to UV
C0016829molecular_functionlyase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE IMD A 901
ChainResidue
ATRP408
APHE415
ATYR422
BLYS208

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE IMD A 902
ChainResidue
AASN330
AASP378
ALEU379
ALYS492

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE IMD A 905
ChainResidue
APRO255
ATRP359
APHE252

site_idAC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE MES A 920
ChainResidue
ALYS244
APRO245
APRO292
AVAL293
AGLN298
ATRP301
AHIS364
AHIS368
AASN405

site_idAC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PO4 A 930
ChainResidue
APHE242
AGLU243

site_idAC6
Number of Residues27
DetailsBINDING SITE FOR RESIDUE FAD A 900
ChainResidue
ALYS244
ATHR257
ATHR258
AVAL259
AMET260
ASER261
ALEU264
AGLN298
ATRP301
AARG302
APHE305
ATRP361
AHIS364
AARG367
AHIS368
APHE390
ALEU394
AASP396
ASER397
AASP398
AILE401
AASN402
AASN405
ATRP406
ALEU409
AHOH3199
AHOH3354

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE IMD C 901
ChainResidue
CTRP408
CPHE415
CARG420
CTYR422
CHOH3357

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE IMD C 902
ChainResidue
CASN330
CASP378
CALA485
CLYS492

site_idAC9
Number of Residues10
DetailsBINDING SITE FOR RESIDUE MES C 920
ChainResidue
CLYS244
CPRO245
CPRO292
CTRP301
CHIS364
CHIS368
CASN405
CTRP408
CFAD900
CHOH3135

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PO4 C 930
ChainResidue
CTRP238
CPHE242
CGLU243
CLYS246
CHOH3286

site_idBC2
Number of Residues29
DetailsBINDING SITE FOR RESIDUE FAD C 900
ChainResidue
CHOH3013
CHOH3047
CHOH3136
CLYS244
CTHR257
CTHR258
CVAL259
CMET260
CSER261
CLEU264
CGLN298
CTRP301
CARG302
CPHE305
CTRP361
CHIS364
CARG367
CHIS368
CPHE390
CLEU394
CASP396
CSER397
CASP398
CILE401
CASN402
CASN405
CTRP406
CLEU409
CMES920

site_idBC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE IMD B 901
ChainResidue
BTRP408
BPHE415
BARG420
BTYR422
CLYS208

site_idBC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE IMD B 904
ChainResidue
BLYS325
BTYR416

site_idBC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE IMD B 905
ChainResidue
BPHE252
BPRO255
BTRP359

site_idBC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE IMD B 906
ChainResidue
BLEU229
BTHR230
BILE233
BTYR273
BCYS277

site_idBC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE MES B 920
ChainResidue
BLYS244
BPRO245
BPRO292
BGLN298
BTRP301
BHIS364
BHIS368
BASN405

site_idBC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PO4 B 930
ChainResidue
BTRP238
BGLU243

site_idBC9
Number of Residues28
DetailsBINDING SITE FOR RESIDUE FAD B 900
ChainResidue
BLYS244
BTHR257
BTHR258
BVAL259
BMET260
BSER261
BLEU264
BGLN298
BTRP301
BARG302
BPHE305
BTRP361
BMET362
BHIS364
BARG367
BHIS368
BPHE390
BLEU394
BASP396
BSER397
BASP398
BILE401
BASN402
BASN405
BTRP406
BLEU409
BHOH3138
BHOH3153

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsBINDING:
ChainResidueDetails
APRO262
BPRO262
CPRO262

site_idSWS_FT_FI2
Number of Residues21
DetailsBINDING: BINDING => ECO:0000269|PubMed:19359474
ChainResidueDetails
ATYR263
BLYS317
BPHE380
BGLY386
BPHE415
BILE421
CTYR263
CGLN276
CLYS317
CPHE380
CGLY386
AGLN276
CPHE415
CILE421
ALYS317
APHE380
AGLY386
APHE415
AILE421
BTYR263
BGLN276

site_idSWS_FT_FI3
Number of Residues6
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AGLY320
APHE427
BGLY320
BPHE427
CGLY320
CPHE427

site_idSWS_FT_FI4
Number of Residues9
DetailsSITE: Electron transfer via tryptophanyl radical => ECO:0000250
ChainResidueDetails
ATRP348
AASN402
AILE425
BTRP348
BASN402
BILE425
CTRP348
CASN402
CILE425

Catalytic Information from CSA
site_idCSA1
Number of Residues3
DetailsAnnotated By Reference To The Literature 1dnp
ChainResidueDetails
ATRP383
ATRP406
ATRP329

site_idCSA2
Number of Residues3
DetailsAnnotated By Reference To The Literature 1dnp
ChainResidueDetails
BTRP383
BTRP406
BTRP329

site_idCSA3
Number of Residues3
DetailsAnnotated By Reference To The Literature 1dnp
ChainResidueDetails
CTRP383
CTRP406
CTRP329

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PDB entries from 2024-10-09

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