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3FQD

Crystal Structure of the S. pombe Rat1-Rai1 Complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0004527molecular_functionexonuclease activity
A0004534molecular_function5'-3' RNA exonuclease activity
A0005634cellular_componentnucleus
A0006139biological_processnucleobase-containing compound metabolic process
B0000166molecular_functionnucleotide binding
B0000448biological_processcleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
B0000956biological_processnuclear-transcribed mRNA catabolic process
B0003723molecular_functionRNA binding
B0004518molecular_functionnuclease activity
B0005515molecular_functionprotein binding
B0005634cellular_componentnucleus
B0005829cellular_componentcytosol
B0006397biological_processmRNA processing
B0019003molecular_functionGDP binding
B0034353molecular_functionmRNA 5'-diphosphatase activity
B0046872molecular_functionmetal ion binding
B0090730cellular_componentLas1 complex
B0110152molecular_functionRNA NAD+-cap (NAD+-forming) hydrolase activity
B0110155biological_processNAD-cap decapping
B0140432molecular_function5'-hydroxyl dinucleotide hydrolase activity
B1990174molecular_functionphosphodiesterase decapping endonuclease activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B1000
ChainResidue
BGLU150
BASP201
BGLU239
BLEU240
BHOH1044
BHOH1162

site_idAC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL B1001
ChainResidue
BTYR246
BMSE297

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:O70348
ChainResidueDetails
BARG33
BTRP93
BCYS182
BGLU199
BLYS241
BGLN263

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:19194460
ChainResidueDetails
BGLU150
BASP201
BGLU239
BLEU240

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0000269|PubMed:18257517
ChainResidueDetails
BSER218

223532

PDB entries from 2024-08-07

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