3FOO
A Triangular Cytochrome b562 Superstructure Mediated by Ni Coordination - Monoclinic Form
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005506 | molecular_function | iron ion binding |
A | 0009055 | molecular_function | electron transfer activity |
A | 0020037 | molecular_function | heme binding |
A | 0022900 | biological_process | electron transport chain |
A | 0042597 | cellular_component | periplasmic space |
A | 0046872 | molecular_function | metal ion binding |
B | 0005506 | molecular_function | iron ion binding |
B | 0009055 | molecular_function | electron transfer activity |
B | 0020037 | molecular_function | heme binding |
B | 0022900 | biological_process | electron transport chain |
B | 0042597 | cellular_component | periplasmic space |
B | 0046872 | molecular_function | metal ion binding |
C | 0005506 | molecular_function | iron ion binding |
C | 0009055 | molecular_function | electron transfer activity |
C | 0020037 | molecular_function | heme binding |
C | 0022900 | biological_process | electron transport chain |
C | 0042597 | cellular_component | periplasmic space |
C | 0046872 | molecular_function | metal ion binding |
D | 0005506 | molecular_function | iron ion binding |
D | 0009055 | molecular_function | electron transfer activity |
D | 0020037 | molecular_function | heme binding |
D | 0022900 | biological_process | electron transport chain |
D | 0042597 | cellular_component | periplasmic space |
D | 0046872 | molecular_function | metal ion binding |
E | 0005506 | molecular_function | iron ion binding |
E | 0009055 | molecular_function | electron transfer activity |
E | 0020037 | molecular_function | heme binding |
E | 0022900 | biological_process | electron transport chain |
E | 0042597 | cellular_component | periplasmic space |
E | 0046872 | molecular_function | metal ion binding |
F | 0005506 | molecular_function | iron ion binding |
F | 0009055 | molecular_function | electron transfer activity |
F | 0020037 | molecular_function | heme binding |
F | 0022900 | biological_process | electron transport chain |
F | 0042597 | cellular_component | periplasmic space |
F | 0046872 | molecular_function | metal ion binding |
G | 0005506 | molecular_function | iron ion binding |
G | 0009055 | molecular_function | electron transfer activity |
G | 0020037 | molecular_function | heme binding |
G | 0022900 | biological_process | electron transport chain |
G | 0042597 | cellular_component | periplasmic space |
G | 0046872 | molecular_function | metal ion binding |
H | 0005506 | molecular_function | iron ion binding |
H | 0009055 | molecular_function | electron transfer activity |
H | 0020037 | molecular_function | heme binding |
H | 0022900 | biological_process | electron transport chain |
H | 0042597 | cellular_component | periplasmic space |
H | 0046872 | molecular_function | metal ion binding |
I | 0005506 | molecular_function | iron ion binding |
I | 0009055 | molecular_function | electron transfer activity |
I | 0020037 | molecular_function | heme binding |
I | 0022900 | biological_process | electron transport chain |
I | 0042597 | cellular_component | periplasmic space |
I | 0046872 | molecular_function | metal ion binding |
J | 0005506 | molecular_function | iron ion binding |
J | 0009055 | molecular_function | electron transfer activity |
J | 0020037 | molecular_function | heme binding |
J | 0022900 | biological_process | electron transport chain |
J | 0042597 | cellular_component | periplasmic space |
J | 0046872 | molecular_function | metal ion binding |
K | 0005506 | molecular_function | iron ion binding |
K | 0009055 | molecular_function | electron transfer activity |
K | 0020037 | molecular_function | heme binding |
K | 0022900 | biological_process | electron transport chain |
K | 0042597 | cellular_component | periplasmic space |
K | 0046872 | molecular_function | metal ion binding |
L | 0005506 | molecular_function | iron ion binding |
L | 0009055 | molecular_function | electron transfer activity |
L | 0020037 | molecular_function | heme binding |
L | 0022900 | biological_process | electron transport chain |
L | 0042597 | cellular_component | periplasmic space |
L | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE HEM A 150 |
Chain | Residue |
A | GLU4 |
A | CYS98 |
A | CYS101 |
A | HIS102 |
A | ARG106 |
A | MET7 |
A | LEU10 |
A | ASN11 |
A | MET33 |
A | PRO45 |
A | PHE61 |
A | GLY64 |
A | PHE65 |
site_id | AC2 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE PXX A 151 |
Chain | Residue |
A | GLN41 |
A | LYS42 |
A | ALA43 |
A | PRO53 |
A | MET58 |
A | CYS59 |
A | ALA62 |
B | ASP73 |
B | ASP74 |
B | HIS77 |
B | NI108 |
site_id | AC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE NI A 107 |
Chain | Residue |
A | ALA1 |
A | ASP39 |
A | HOH166 |
site_id | AC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE NI A 108 |
Chain | Residue |
A | HIS77 |
C | HOH124 |
C | HOH125 |
C | PXX151 |
site_id | AC5 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE HEM B 150 |
Chain | Residue |
B | GLU4 |
B | MET7 |
B | MET33 |
B | PRO46 |
B | PHE61 |
B | PHE65 |
B | THR97 |
B | CYS98 |
B | CYS101 |
B | HIS102 |
B | TYR105 |
B | ARG106 |
site_id | AC6 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE PXX B 151 |
Chain | Residue |
B | GLN41 |
B | LYS42 |
B | ALA43 |
B | PRO53 |
B | MET58 |
B | CYS59 |
B | ALA62 |
C | ASP73 |
C | ASP74 |
C | HIS77 |
C | NI108 |
C | HOH123 |
site_id | AC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE NI B 107 |
Chain | Residue |
B | ALA1 |
B | ASP39 |
B | HOH171 |
site_id | AC8 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE NI B 108 |
Chain | Residue |
A | PXX151 |
B | HIS77 |
B | HOH121 |
site_id | AC9 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE HEM C 150 |
Chain | Residue |
C | GLU4 |
C | MET7 |
C | PRO46 |
C | PHE61 |
C | PHE65 |
C | THR97 |
C | CYS98 |
C | CYS101 |
C | HIS102 |
C | ARG106 |
site_id | BC1 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE PXX C 151 |
Chain | Residue |
A | ASP73 |
A | ASP74 |
A | HIS77 |
A | NI108 |
C | GLN41 |
C | LYS42 |
C | ALA43 |
C | PRO53 |
C | MET58 |
C | CYS59 |
C | ALA62 |
site_id | BC2 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE NI C 107 |
Chain | Residue |
C | ALA1 |
C | ASP39 |
site_id | BC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE NI C 108 |
Chain | Residue |
B | HOH122 |
B | PXX151 |
C | HIS77 |
C | HOH123 |
site_id | BC4 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE HEM D 150 |
Chain | Residue |
D | ARG106 |
D | GLU4 |
D | MET7 |
D | ASN11 |
D | PRO45 |
D | PRO46 |
D | PHE61 |
D | PHE65 |
D | CYS98 |
D | CYS101 |
D | HIS102 |
D | TYR105 |
site_id | BC5 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE PXX D 151 |
Chain | Residue |
D | GLN41 |
D | LYS42 |
D | ALA43 |
D | PRO53 |
D | MET58 |
D | CYS59 |
D | ALA62 |
E | ASP73 |
E | ASP74 |
E | HIS77 |
E | NI108 |
site_id | BC6 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE NI D 107 |
Chain | Residue |
D | ALA1 |
D | ASP39 |
site_id | BC7 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE NI D 108 |
Chain | Residue |
D | HIS77 |
F | HOH118 |
F | HOH119 |
F | PXX151 |
site_id | BC8 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE HEM E 150 |
Chain | Residue |
E | LEU3 |
E | GLU4 |
E | MET7 |
E | ASN11 |
E | PHE61 |
E | PHE65 |
E | LEU68 |
E | CYS98 |
E | CYS101 |
E | HIS102 |
E | TYR105 |
E | ARG106 |
site_id | BC9 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE PXX E 151 |
Chain | Residue |
E | GLN41 |
E | LYS42 |
E | ALA43 |
E | PRO53 |
E | MET58 |
E | CYS59 |
E | ALA62 |
F | ASP73 |
F | ASP74 |
F | HIS77 |
F | NI108 |
site_id | CC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE NI E 107 |
Chain | Residue |
E | ALA1 |
E | ASP39 |
E | HOH149 |
site_id | CC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE NI E 108 |
Chain | Residue |
D | HOH113 |
D | HOH114 |
D | PXX151 |
E | HIS77 |
site_id | CC3 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE HEM F 150 |
Chain | Residue |
A | LYS85 |
F | GLU4 |
F | MET7 |
F | PRO45 |
F | PHE61 |
F | PHE65 |
F | CYS98 |
F | CYS101 |
F | HIS102 |
F | TYR105 |
F | ARG106 |
site_id | CC4 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE PXX F 151 |
Chain | Residue |
D | ASP73 |
D | ASP74 |
D | HIS77 |
D | NI108 |
F | GLN41 |
F | LYS42 |
F | ALA43 |
F | PRO53 |
F | MET58 |
F | CYS59 |
F | ALA62 |
site_id | CC5 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE NI F 107 |
Chain | Residue |
F | ALA1 |
F | ASP39 |
site_id | CC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE NI F 108 |
Chain | Residue |
E | HOH117 |
E | PXX151 |
F | HIS77 |
F | HOH116 |
site_id | CC7 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE HEM G 150 |
Chain | Residue |
G | GLU4 |
G | MET7 |
G | ASN11 |
G | LEU14 |
G | PRO46 |
G | PHE61 |
G | PHE65 |
G | CYS98 |
G | CYS101 |
G | HIS102 |
G | TYR105 |
G | ARG106 |
site_id | CC8 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE PXX G 151 |
Chain | Residue |
G | GLN41 |
G | LYS42 |
G | ALA43 |
G | PRO53 |
G | MET58 |
G | CYS59 |
H | ASP73 |
H | ASP74 |
H | HIS77 |
H | NI108 |
site_id | CC9 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE NI G 107 |
Chain | Residue |
G | ALA1 |
G | ASP39 |
site_id | DC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE NI G 108 |
Chain | Residue |
G | HIS77 |
G | HOH112 |
I | HOH110 |
I | PXX151 |
site_id | DC2 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE HEM H 150 |
Chain | Residue |
H | GLU4 |
H | MET7 |
H | ASN11 |
H | LEU14 |
H | PHE61 |
H | PHE65 |
H | THR97 |
H | CYS98 |
H | CYS101 |
H | HIS102 |
H | TYR105 |
H | ARG106 |
site_id | DC3 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE PXX H 151 |
Chain | Residue |
H | GLN41 |
H | LYS42 |
H | ALA43 |
H | PRO53 |
H | MET58 |
H | CYS59 |
H | ALA62 |
I | ASP73 |
I | ASP74 |
I | HIS77 |
I | NI108 |
site_id | DC4 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE NI H 107 |
Chain | Residue |
H | ALA1 |
H | ASP39 |
site_id | DC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE NI H 108 |
Chain | Residue |
G | HOH109 |
G | HOH110 |
G | PXX151 |
H | HIS77 |
site_id | DC6 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE HEM I 150 |
Chain | Residue |
I | GLU4 |
I | MET7 |
I | ASN11 |
I | PRO45 |
I | PRO46 |
I | PHE61 |
I | PHE65 |
I | LEU68 |
I | CYS98 |
I | CYS101 |
I | HIS102 |
I | TYR105 |
I | ARG106 |
site_id | DC7 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE PXX I 151 |
Chain | Residue |
G | ASP73 |
G | ASP74 |
G | HIS77 |
G | NI108 |
I | GLN41 |
I | LYS42 |
I | ALA43 |
I | PRO53 |
I | MET58 |
I | CYS59 |
site_id | DC8 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE NI I 107 |
Chain | Residue |
I | ALA1 |
I | ASP39 |
site_id | DC9 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE NI I 108 |
Chain | Residue |
H | HOH111 |
H | HOH112 |
H | PXX151 |
I | HIS77 |
site_id | EC1 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE HEM J 150 |
Chain | Residue |
J | GLU4 |
J | MET7 |
J | ASN11 |
J | PRO45 |
J | PRO46 |
J | PHE61 |
J | PHE65 |
J | CYS98 |
J | CYS101 |
J | HIS102 |
J | TYR105 |
J | ARG106 |
site_id | EC2 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE PXX J 151 |
Chain | Residue |
J | GLN41 |
J | LYS42 |
J | ALA43 |
J | PRO53 |
J | MET58 |
J | CYS59 |
J | ALA62 |
L | ASP73 |
L | ASP74 |
L | HIS77 |
L | NI108 |
site_id | EC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE NI J 107 |
Chain | Residue |
J | ALA1 |
J | ASP39 |
J | HOH182 |
site_id | EC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE NI J 108 |
Chain | Residue |
J | HIS77 |
K | HOH112 |
K | HOH113 |
K | PXX151 |
site_id | EC5 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE HEM K 150 |
Chain | Residue |
K | GLU4 |
K | MET7 |
K | ASN11 |
K | MET33 |
K | PRO46 |
K | PHE61 |
K | PHE65 |
K | CYS98 |
K | CYS101 |
K | HIS102 |
K | TYR105 |
K | ARG106 |
site_id | EC6 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE PXX K 151 |
Chain | Residue |
J | ASP74 |
J | HIS77 |
J | NI108 |
K | GLN41 |
K | LYS42 |
K | ALA43 |
K | PRO53 |
K | MET58 |
K | CYS59 |
K | HOH112 |
site_id | EC7 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE NI K 107 |
Chain | Residue |
K | ALA1 |
K | ASP39 |
site_id | EC8 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE NI K 108 |
Chain | Residue |
K | HIS77 |
K | HOH128 |
K | HOH129 |
L | PXX151 |
site_id | EC9 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE HEM L 150 |
Chain | Residue |
L | GLU4 |
L | MET7 |
L | PRO45 |
L | PRO46 |
L | PHE61 |
L | PHE65 |
L | THR97 |
L | CYS98 |
L | CYS101 |
L | HIS102 |
L | ARG106 |
site_id | FC1 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE PXX L 151 |
Chain | Residue |
K | ASP73 |
K | ASP74 |
K | HIS77 |
K | NI108 |
L | GLN41 |
L | LYS42 |
L | ALA43 |
L | PRO53 |
L | MET58 |
L | CYS59 |
site_id | FC2 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE NI L 107 |
Chain | Residue |
L | ALA1 |
L | ASP39 |
L | HOH194 |
site_id | FC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE NI L 108 |
Chain | Residue |
J | HOH126 |
J | PXX151 |
L | HIS77 |
L | HOH127 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 24 |
Details | BINDING: axial binding residue |
Chain | Residue | Details |
A | MET7 | |
E | HIS102 | |
F | MET7 | |
F | HIS102 | |
G | MET7 | |
G | HIS102 | |
H | MET7 | |
H | HIS102 | |
I | MET7 | |
I | HIS102 | |
J | MET7 | |
A | HIS102 | |
J | HIS102 | |
K | MET7 | |
K | HIS102 | |
L | MET7 | |
L | HIS102 | |
B | MET7 | |
B | HIS102 | |
C | MET7 | |
C | HIS102 | |
D | MET7 | |
D | HIS102 | |
E | MET7 |