3FFU
Structure of the RNA pyrophosphohydrolase BdRppH in complex with GTP and magnesium
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005525 | molecular_function | GTP binding |
A | 0006260 | biological_process | DNA replication |
A | 0006281 | biological_process | DNA repair |
A | 0008413 | molecular_function | 8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity |
A | 0016787 | molecular_function | hydrolase activity |
A | 0035539 | molecular_function | 8-oxo-7,8-dihydrodeoxyguanosine triphosphate pyrophosphatase activity |
A | 0042802 | molecular_function | identical protein binding |
A | 0044715 | molecular_function | 8-oxo-dGDP phosphatase activity |
A | 0044716 | molecular_function | 8-oxo-GDP phosphatase activity |
A | 0046872 | molecular_function | metal ion binding |
B | 0005525 | molecular_function | GTP binding |
B | 0006260 | biological_process | DNA replication |
B | 0006281 | biological_process | DNA repair |
B | 0008413 | molecular_function | 8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity |
B | 0016787 | molecular_function | hydrolase activity |
B | 0035539 | molecular_function | 8-oxo-7,8-dihydrodeoxyguanosine triphosphate pyrophosphatase activity |
B | 0042802 | molecular_function | identical protein binding |
B | 0044715 | molecular_function | 8-oxo-dGDP phosphatase activity |
B | 0044716 | molecular_function | 8-oxo-GDP phosphatase activity |
B | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 24 |
Details | BINDING SITE FOR RESIDUE GTP B4032 |
Chain | Residue |
B | VAL24 |
B | GLU70 |
B | GLU74 |
B | ILE97 |
B | ILE99 |
B | PRO133 |
B | ASN136 |
B | MG154 |
B | MG155 |
B | MG156 |
B | HOH157 |
B | ARG40 |
B | HOH158 |
B | HOH159 |
B | HOH161 |
B | HOH162 |
B | HOH163 |
B | ASN44 |
B | LEU46 |
B | GLU51 |
B | PHE52 |
B | GLY54 |
B | GLY55 |
B | LYS56 |
site_id | AC2 |
Number of Residues | 23 |
Details | BINDING SITE FOR RESIDUE GTP A4033 |
Chain | Residue |
A | VAL24 |
A | ARG40 |
A | ASN44 |
A | LEU46 |
A | GLU51 |
A | PHE52 |
A | GLY54 |
A | GLY55 |
A | LYS56 |
A | GLU70 |
A | GLU74 |
A | TYR92 |
A | ILE97 |
A | PRO133 |
A | ASN136 |
A | MG154 |
A | MG155 |
A | MG156 |
A | HOH157 |
A | HOH159 |
A | HOH161 |
A | HOH162 |
A | HOH163 |
site_id | AC3 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE MG A 154 |
Chain | Residue |
A | GLU70 |
A | GLU73 |
A | MG155 |
A | HOH161 |
A | HOH162 |
A | HOH163 |
A | GTP4033 |
site_id | AC4 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE MG A 155 |
Chain | Residue |
A | GLU70 |
A | GLU74 |
A | MG154 |
A | MG156 |
A | HOH159 |
A | HOH160 |
A | HOH161 |
A | GTP4033 |
site_id | AC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG A 156 |
Chain | Residue |
A | GLY54 |
A | GLU74 |
A | MG155 |
A | HOH157 |
A | HOH158 |
A | GTP4033 |
site_id | AC6 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE MG B 154 |
Chain | Residue |
B | GLU70 |
B | GLU73 |
B | MG155 |
B | HOH161 |
B | HOH162 |
B | HOH163 |
B | GTP4032 |
site_id | AC7 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE MG B 155 |
Chain | Residue |
B | GLU70 |
B | GLU73 |
B | GLU74 |
B | MG154 |
B | MG156 |
B | HOH159 |
B | HOH160 |
B | HOH161 |
B | GTP4032 |
site_id | AC8 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE MG B 156 |
Chain | Residue |
B | GLY54 |
B | GLU74 |
B | MG155 |
B | HOH157 |
B | HOH158 |
B | HOH159 |
B | GTP4032 |
Functional Information from PROSITE/UniProt
site_id | PS00893 |
Number of Residues | 22 |
Details | NUDIX_BOX Nudix box signature. GkiengEtpeeALaRELnEElG |
Chain | Residue | Details |
A | GLY55-GLY76 |