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3FCV

Crystal structure of the Mimivirus NDK +Kpn-N62L-R107G triple mutant complexed with dUDP

Functional Information from GO Data
ChainGOidnamespacecontents
A0004550molecular_functionnucleoside diphosphate kinase activity
A0006183biological_processGTP biosynthetic process
A0006228biological_processUTP biosynthetic process
A0006241biological_processCTP biosynthetic process
B0004550molecular_functionnucleoside diphosphate kinase activity
B0006183biological_processGTP biosynthetic process
B0006228biological_processUTP biosynthetic process
B0006241biological_processCTP biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues15
DetailsBINDING SITE FOR RESIDUE DUD A 201
ChainResidue
ALYS9
AHOH151
AHOH165
AHOH167
AHOH180
AHOH195
AMG202
ATYR50
AHIS53
ATYR58
AARG86
ATHR92
AARG103
AILE110
AASN113

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 202
ChainResidue
AASP119
AHOH193
AHOH198
ADUD201

site_idAC3
Number of Residues15
DetailsBINDING SITE FOR RESIDUE DUD B 201
ChainResidue
BLYS9
BTYR50
BHIS53
BTYR58
BLEU62
BARG86
BTHR92
BARG103
BILE110
BGLY111
BASN113
BHOH143
BHOH183
BHOH188
BMG202

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG B 202
ChainResidue
BHIS53
BHOH156
BHOH188
BDUD201

Functional Information from PROSITE/UniProt
site_idPS00469
Number of Residues9
DetailsNDPK Nucleoside diphosphate kinase (NDPK) active site signature. NliHASDSE
ChainResidueDetails
AASN113-GLU121

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"description":"Pros-phosphohistidine intermediate","evidences":[{"source":"PROSITE-ProRule","id":"PRU10030","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues10
DetailsBinding site: {}
ChainResidueDetails

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1nsp
ChainResidueDetails
AASN113
ALYS9

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1nsp
ChainResidueDetails
BASN113
BLYS9

site_idCSA3
Number of Residues2
DetailsAnnotated By Reference To The Literature 1nsp
ChainResidueDetails
ATYR50
ALYS9

site_idCSA4
Number of Residues2
DetailsAnnotated By Reference To The Literature 1nsp
ChainResidueDetails
BTYR50
BLYS9

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PDB entries from 2025-12-17

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