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3FA3

Crystal structure of 2,3-dimethylmalate lyase, a PEP mutase/isocitrate lyase superfamily member, trigonal crystal form

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0016787molecular_functionhydrolase activity
A0016829molecular_functionlyase activity
A0046872molecular_functionmetal ion binding
B0003824molecular_functioncatalytic activity
B0016787molecular_functionhydrolase activity
B0016829molecular_functionlyase activity
B0046872molecular_functionmetal ion binding
C0003824molecular_functioncatalytic activity
C0016787molecular_functionhydrolase activity
C0016829molecular_functionlyase activity
C0046872molecular_functionmetal ion binding
D0003824molecular_functioncatalytic activity
D0016787molecular_functionhydrolase activity
D0016829molecular_functionlyase activity
D0046872molecular_functionmetal ion binding
E0003824molecular_functioncatalytic activity
E0016787molecular_functionhydrolase activity
E0016829molecular_functionlyase activity
E0046872molecular_functionmetal ion binding
F0003824molecular_functioncatalytic activity
F0016787molecular_functionhydrolase activity
F0016829molecular_functionlyase activity
F0046872molecular_functionmetal ion binding
G0003824molecular_functioncatalytic activity
G0016787molecular_functionhydrolase activity
G0016829molecular_functionlyase activity
G0046872molecular_functionmetal ion binding
H0003824molecular_functioncatalytic activity
H0016787molecular_functionhydrolase activity
H0016829molecular_functionlyase activity
H0046872molecular_functionmetal ion binding
I0003824molecular_functioncatalytic activity
I0016787molecular_functionhydrolase activity
I0016829molecular_functionlyase activity
I0046872molecular_functionmetal ion binding
J0003824molecular_functioncatalytic activity
J0016787molecular_functionhydrolase activity
J0016829molecular_functionlyase activity
J0046872molecular_functionmetal ion binding
K0003824molecular_functioncatalytic activity
K0016787molecular_functionhydrolase activity
K0016829molecular_functionlyase activity
K0046872molecular_functionmetal ion binding
L0003824molecular_functioncatalytic activity
L0016787molecular_functionhydrolase activity
L0016829molecular_functionlyase activity
L0046872molecular_functionmetal ion binding
M0003824molecular_functioncatalytic activity
M0016787molecular_functionhydrolase activity
M0016829molecular_functionlyase activity
M0046872molecular_functionmetal ion binding
N0003824molecular_functioncatalytic activity
N0016787molecular_functionhydrolase activity
N0016829molecular_functionlyase activity
N0046872molecular_functionmetal ion binding
O0003824molecular_functioncatalytic activity
O0016787molecular_functionhydrolase activity
O0016829molecular_functionlyase activity
O0046872molecular_functionmetal ion binding
P0003824molecular_functioncatalytic activity
P0016787molecular_functionhydrolase activity
P0016829molecular_functionlyase activity
P0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN A 401
ChainResidue
AASP87
ALYS122
AHOH304
AHOH305
AHOH306
AOAF501

site_idAC2
Number of Residues17
DetailsBINDING SITE FOR RESIDUE OAF A 501
ChainResidue
AALA48
AASP59
AASP87
ACYS124
AGLY125
AHIS126
AARG161
AGLU191
AASN214
AVAL216
APRO240
AHOH305
AHOH306
AMN401
ATYR44
ATHR46
AGLY47

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 602
ChainResidue
AMET74
AASN77
AILE78
BHOH617
CGLU103
CGLN104
CARG107
CHOH319

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 605
ChainResidue
AGLY39
AASP41
AHOH814
IGLN290
IGLY298
IGLY299

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN B 401
ChainResidue
BASP87
BLYS122
BHOH306
BHOH307
BHOH308
BOAF501

site_idAC6
Number of Residues16
DetailsBINDING SITE FOR RESIDUE OAF B 501
ChainResidue
BTYR44
BTHR46
BGLY47
BALA48
BASP59
BASP87
BCYS124
BGLY125
BARG161
BGLU191
BASN214
BVAL216
BPRO240
BHOH306
BHOH307
BMN401

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN C 401
ChainResidue
CASP87
CLYS122
CHOH309
CHOH310
CHOH311
COAF501

site_idAC8
Number of Residues15
DetailsBINDING SITE FOR RESIDUE OAF C 501
ChainResidue
CTYR44
CTHR46
CGLY47
CALA48
CASP59
CASP87
CCYS124
CGLY125
CHIS126
CARG161
CGLU191
CASN214
CPRO240
CHOH309
CMN401

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN D 401
ChainResidue
DASP87
DLYS122
DHOH312
DHOH313
DHOH314
DOAF501

site_idBC1
Number of Residues16
DetailsBINDING SITE FOR RESIDUE OAF D 501
ChainResidue
DHOH313
DHOH314
DMN401
DTYR44
DTHR46
DGLY47
DALA48
DASP59
DASP87
DCYS124
DGLY125
DARG161
DGLU191
DASN214
DVAL216
DPRO240

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN E 401
ChainResidue
EASP87
ELYS122
EHOH315
EHOH316
EHOH317
EOAF501

site_idBC3
Number of Residues16
DetailsBINDING SITE FOR RESIDUE OAF E 501
ChainResidue
ETYR44
ETHR46
EGLY47
EALA48
EASP59
EASP87
ECYS124
EGLY125
EHIS126
EARG161
EGLU191
EASN214
EVAL216
EPRO240
EHOH317
EMN401

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL E 604
ChainResidue
EARG69
EALA70
EGLU73
GARG69

site_idBC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN F 401
ChainResidue
FASP87
FHOH318
FHOH319
FHOH320
FOAF501

site_idBC6
Number of Residues16
DetailsBINDING SITE FOR RESIDUE OAF F 501
ChainResidue
FTYR44
FTHR46
FGLY47
FALA48
FASP59
FASP87
FCYS124
FGLY125
FARG161
FGLU191
FASN214
FVAL216
FPRO240
FHOH318
FHOH319
FMN401

site_idBC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN G 401
ChainResidue
GASP87
GLYS122
GHOH321
GHOH322
GHOH323
GOAF501

site_idBC8
Number of Residues17
DetailsBINDING SITE FOR RESIDUE OAF G 501
ChainResidue
GTYR44
GTHR46
GGLY47
GALA48
GASP59
GASP87
GCYS124
GGLY125
GHIS126
GARG161
GGLU191
GASN214
GVAL216
GPRO240
GHOH322
GHOH323
GMN401

site_idBC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL G 601
ChainResidue
GTYR27
GASP28
GSER53
GVAL54
GASN71
HSER53
HVAL54

site_idCC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN H 401
ChainResidue
HASP87
HLYS122
HHOH324
HHOH325
HHOH326
HOAF501

site_idCC2
Number of Residues16
DetailsBINDING SITE FOR RESIDUE OAF H 501
ChainResidue
HTYR44
HTHR46
HGLY47
HALA48
HASP59
HASP87
HCYS124
HGLY125
HARG161
HGLU191
HASN214
HVAL216
HPRO240
HHOH325
HHOH326
HMN401

site_idCC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN I 401
ChainResidue
IASP87
ILYS122
IHOH327
IHOH328
IHOH329
IOAF501

site_idCC4
Number of Residues18
DetailsBINDING SITE FOR RESIDUE OAF I 501
ChainResidue
ITYR44
ITHR46
IGLY47
IALA48
IASP59
IASP87
ICYS124
IGLY125
IHIS126
IARG161
IGLU191
IASN214
IVAL216
IPRO240
IHOH327
IHOH328
IHOH329
IMN401

site_idCC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN J 401
ChainResidue
JASP87
JASP89
JHOH330
JHOH331
JHOH809

site_idCC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN K 401
ChainResidue
KASP87
KHOH332
KHOH333
KHOH334
KOAF501

site_idCC7
Number of Residues15
DetailsBINDING SITE FOR RESIDUE OAF K 501
ChainResidue
KTYR44
KTHR46
KGLY47
KALA48
KASP59
KASP87
KCYS124
KGLY125
KARG161
KGLU191
KASN214
KVAL216
KPRO240
KHOH333
KMN401

site_idCC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN L 401
ChainResidue
LASP87
LLYS122
LHOH336
LHOH337
LHOH338
LOAF501

site_idCC9
Number of Residues16
DetailsBINDING SITE FOR RESIDUE OAF L 501
ChainResidue
LTYR44
LTHR46
LGLY47
LALA48
LASP59
LASP87
LCYS124
LGLY125
LHIS126
LARG161
LGLU191
LASN214
LPRO240
LHOH337
LHOH338
LMN401

site_idDC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN M 401
ChainResidue
MASP87
MLYS122
MHOH339
MHOH340
MHOH341
MOAF501

site_idDC2
Number of Residues15
DetailsBINDING SITE FOR RESIDUE OAF M 501
ChainResidue
MTYR44
MTHR46
MGLY47
MALA48
MASP59
MASP87
MCYS124
MGLY125
MARG161
MGLU191
MASN214
MPRO240
MHOH340
MHOH341
MMN401

site_idDC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL M 606
ChainResidue
EGLY39
EASP41
MGLN290
MALA295
MHOH815

site_idDC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN N 401
ChainResidue
NASP87
NASP89
NHOH342
NHOH343
NHOH344

site_idDC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN O 401
ChainResidue
OASP87
OHOH345
OHOH347
OHOH348
OOAF501

site_idDC6
Number of Residues15
DetailsBINDING SITE FOR RESIDUE OAF O 501
ChainResidue
OTYR44
OTHR46
OGLY47
OALA48
OASP59
OASP87
OCYS124
OGLY125
OARG161
OGLU191
OASN214
OVAL216
OPRO240
OHOH348
OMN401

site_idDC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN P 401
ChainResidue
PASP87
PLYS122
PHOH349
PHOH350
PHOH351
POAF501

site_idDC8
Number of Residues15
DetailsBINDING SITE FOR RESIDUE OAF P 501
ChainResidue
PTYR44
PTHR46
PGLY47
PALA48
PASP59
PASP87
PCYS124
PGLY125
PHIS126
PARG161
PGLU191
PASN214
PPRO240
PHOH351
PMN401

Functional Information from PROSITE/UniProt
site_idPS00161
Number of Residues6
DetailsISOCITRATE_LYASE Isocitrate lyase signature. KRCGHL
ChainResidueDetails
ALYS122-LEU127

221051

PDB entries from 2024-06-12

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