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3F9X

Structural Insights into Lysine Multiple Methylation by SET Domain Methyltransferases, SET8-Y334F / H4-Lys20me2 / AdoHcy

Functional Information from GO Data
ChainGOidnamespacecontents
A0042799molecular_functionhistone H4K20 methyltransferase activity
B0042799molecular_functionhistone H4K20 methyltransferase activity
C0042799molecular_functionhistone H4K20 methyltransferase activity
D0042799molecular_functionhistone H4K20 methyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues18
DetailsBINDING SITE FOR RESIDUE SAH A 801
ChainResidue
AHOH163
AHIS299
ATYR336
ATRP349
AHOH380
AHOH383
AHOH397
AHOH466
FHIS18
FMLY20
AHOH174
AGLY225
ALYS226
AARG228
ATYR271
AARG295
ALEU296
AASN298

site_idAC2
Number of Residues15
DetailsBINDING SITE FOR RESIDUE SAH B 801
ChainResidue
BHOH110
BGLY225
BLYS226
BARG228
BTYR271
BARG295
BLEU296
BASN298
BHIS299
BTYR336
BTRP349
BHOH372
BHOH398
EHIS18
EMLY20

site_idAC3
Number of Residues15
DetailsBINDING SITE FOR RESIDUE SAH C 801
ChainResidue
CGLY225
CLYS226
CARG228
CTYR271
CARG295
CLEU296
CASN298
CHIS299
CTYR336
CTRP349
CHOH356
CHOH367
CHOH379
CHOH757
GHIS18

site_idAC4
Number of Residues19
DetailsBINDING SITE FOR RESIDUE SAH D 801
ChainResidue
BHOH25
DHOH19
DHOH56
DGLY225
DLYS226
DARG228
DTYR271
DARG295
DLEU296
DASN298
DHIS299
DTYR336
DTRP349
DHOH362
DHOH387
DHOH391
EARG23
HHIS18
HMLY20

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues484
DetailsDomain: {"description":"SET","evidences":[{"source":"PROSITE-ProRule","id":"PRU00190","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues16
DetailsBinding site: {}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues16
DetailsDNA binding: {}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues4
DetailsModified residue: {"description":"N6-propionyllysine; alternate","evidences":[{"source":"PubMed","id":"17267393","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues4
DetailsModified residue: {"description":"N6-methyllysine; alternate","evidences":[{"source":"PubMed","id":"12086618","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15964846","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"17967882","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27338793","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues8
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate","evidences":[{"source":"PubMed","id":"28112733","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

246031

PDB entries from 2025-12-10

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