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3EVC

Crystal structure of GTP complex of yellow fever virus methyltransferase and S-adenosyl-L-homocysteine

Functional Information from GO Data
ChainGOidnamespacecontents
A0004482molecular_functionmRNA 5'-cap (guanine-N7-)-methyltransferase activity
A0004483molecular_functionmRNA (nucleoside-2'-O-)-methyltransferase activity
A0008168molecular_functionmethyltransferase activity
A0032259biological_processmethylation
Functional Information from PDB Data
site_idAC1
Number of Residues19
DetailsBINDING SITE FOR RESIDUE SAH A 901
ChainResidue
ASER56
AHIS110
AGLU111
ATHR130
AASP131
AILE132
AHIS133
AASP146
AHOH520
AHOH547
AHOH580
AGLY58
AGLY81
ACYS82
AGLY83
AGLY86
ATRP87
ATHR104
ALEU105

site_idAC2
Number of Residues13
DetailsBINDING SITE FOR RESIDUE GTP A 902
ChainResidue
ALYS13
ALEU16
AASN17
ALEU19
APHE24
ASER150
ASER151
ASER152
ASER215
AHOH540
AHOH625
AHOH687
AHOH688

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: For 2'-O-MTase activity => ECO:0000250|UniProtKB:Q6YMS4
ChainResidueDetails
ALYS61
AASP146
ALYS182
AGLU218

site_idSWS_FT_FI2
Number of Residues9
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00924
ChainResidueDetails
ASER56
AGLY86
ATRP87
ATHR104
ALEU105
AASP131
AILE132
AILE147
ATYR220

site_idSWS_FT_FI3
Number of Residues6
DetailsSITE: mRNA cap binding => ECO:0000255|PROSITE-ProRule:PRU00924, ECO:0000269|PubMed:19101564
ChainResidueDetails
ALYS13
AASN17
ALYS28
ASER150
AARG213
ASER215

site_idSWS_FT_FI4
Number of Residues2
DetailsSITE: mRNA cap binding; via carbonyl oxygen => ECO:0000255|PROSITE-ProRule:PRU00924, ECO:0000269|PubMed:19101564
ChainResidueDetails
ALEU16
ALEU19

site_idSWS_FT_FI5
Number of Residues1
DetailsSITE: mRNA cap binding => ECO:0000255|PROSITE-ProRule:PRU00924
ChainResidueDetails
APHE24

site_idSWS_FT_FI6
Number of Residues3
DetailsSITE: Essential for 2'-O-methyltransferase activity => ECO:0000255|PROSITE-ProRule:PRU00924
ChainResidueDetails
ALYS61
ALYS182
AGLU218

site_idSWS_FT_FI7
Number of Residues1
DetailsSITE: Essential for 2'-O-methyltransferase and N-7 methyltransferase activity => ECO:0000255|PROSITE-ProRule:PRU00924, ECO:0000269|PubMed:18757072
ChainResidueDetails
AASP146

site_idSWS_FT_FI8
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0000269|PubMed:18757072
ChainResidueDetails
ASER56

222624

PDB entries from 2024-07-17

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