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3ETD

Structure of glutamate dehydrogenase complexed with bithionol

Functional Information from GO Data
ChainGOidnamespacecontents
A0004352molecular_functionglutamate dehydrogenase (NAD+) activity
A0004353molecular_functionglutamate dehydrogenase [NAD(P)+] activity
A0004354molecular_functionglutamate dehydrogenase (NADP+) activity
A0005524molecular_functionATP binding
A0005525molecular_functionGTP binding
A0005739cellular_componentmitochondrion
A0005743cellular_componentmitochondrial inner membrane
A0005783cellular_componentendoplasmic reticulum
A0006520biological_processamino acid metabolic process
A0006538biological_processglutamate catabolic process
A0006541biological_processglutamine metabolic process
A0016491molecular_functionoxidoreductase activity
A0016639molecular_functionoxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor
A0042802molecular_functionidentical protein binding
A0072350biological_processtricarboxylic acid metabolic process
B0004352molecular_functionglutamate dehydrogenase (NAD+) activity
B0004353molecular_functionglutamate dehydrogenase [NAD(P)+] activity
B0004354molecular_functionglutamate dehydrogenase (NADP+) activity
B0005524molecular_functionATP binding
B0005525molecular_functionGTP binding
B0005739cellular_componentmitochondrion
B0005743cellular_componentmitochondrial inner membrane
B0005783cellular_componentendoplasmic reticulum
B0006520biological_processamino acid metabolic process
B0006538biological_processglutamate catabolic process
B0006541biological_processglutamine metabolic process
B0016491molecular_functionoxidoreductase activity
B0016639molecular_functionoxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor
B0042802molecular_functionidentical protein binding
B0072350biological_processtricarboxylic acid metabolic process
C0004352molecular_functionglutamate dehydrogenase (NAD+) activity
C0004353molecular_functionglutamate dehydrogenase [NAD(P)+] activity
C0004354molecular_functionglutamate dehydrogenase (NADP+) activity
C0005524molecular_functionATP binding
C0005525molecular_functionGTP binding
C0005739cellular_componentmitochondrion
C0005743cellular_componentmitochondrial inner membrane
C0005783cellular_componentendoplasmic reticulum
C0006520biological_processamino acid metabolic process
C0006538biological_processglutamate catabolic process
C0006541biological_processglutamine metabolic process
C0016491molecular_functionoxidoreductase activity
C0016639molecular_functionoxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor
C0042802molecular_functionidentical protein binding
C0072350biological_processtricarboxylic acid metabolic process
D0004352molecular_functionglutamate dehydrogenase (NAD+) activity
D0004353molecular_functionglutamate dehydrogenase [NAD(P)+] activity
D0004354molecular_functionglutamate dehydrogenase (NADP+) activity
D0005524molecular_functionATP binding
D0005525molecular_functionGTP binding
D0005739cellular_componentmitochondrion
D0005743cellular_componentmitochondrial inner membrane
D0005783cellular_componentendoplasmic reticulum
D0006520biological_processamino acid metabolic process
D0006538biological_processglutamate catabolic process
D0006541biological_processglutamine metabolic process
D0016491molecular_functionoxidoreductase activity
D0016639molecular_functionoxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor
D0042802molecular_functionidentical protein binding
D0072350biological_processtricarboxylic acid metabolic process
E0004352molecular_functionglutamate dehydrogenase (NAD+) activity
E0004353molecular_functionglutamate dehydrogenase [NAD(P)+] activity
E0004354molecular_functionglutamate dehydrogenase (NADP+) activity
E0005524molecular_functionATP binding
E0005525molecular_functionGTP binding
E0005739cellular_componentmitochondrion
E0005743cellular_componentmitochondrial inner membrane
E0005783cellular_componentendoplasmic reticulum
E0006520biological_processamino acid metabolic process
E0006538biological_processglutamate catabolic process
E0006541biological_processglutamine metabolic process
E0016491molecular_functionoxidoreductase activity
E0016639molecular_functionoxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor
E0042802molecular_functionidentical protein binding
E0072350biological_processtricarboxylic acid metabolic process
F0004352molecular_functionglutamate dehydrogenase (NAD+) activity
F0004353molecular_functionglutamate dehydrogenase [NAD(P)+] activity
F0004354molecular_functionglutamate dehydrogenase (NADP+) activity
F0005524molecular_functionATP binding
F0005525molecular_functionGTP binding
F0005739cellular_componentmitochondrion
F0005743cellular_componentmitochondrial inner membrane
F0005783cellular_componentendoplasmic reticulum
F0006520biological_processamino acid metabolic process
F0006538biological_processglutamate catabolic process
F0006541biological_processglutamine metabolic process
F0016491molecular_functionoxidoreductase activity
F0016639molecular_functionoxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor
F0042802molecular_functionidentical protein binding
F0072350biological_processtricarboxylic acid metabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues20
DetailsBINDING SITE FOR RESIDUE NDP A 551
ChainResidue
AARG94
AGLY253
AASN254
AVAL255
AGLU275
ASER276
AALA326
AGLY347
AALA348
AASN349
AASN374
ALYS134
AGLU550
AASP168
AMET169
ASER170
AARG211
ATHR215
AGLN250
APHE252

site_idAC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GTP A 553
ChainResidue
AHIS209
AGLY210
AILE212
AARG217
AARG261
AARG265
AGLU292
AHIS450

site_idAC3
Number of Residues18
DetailsBINDING SITE FOR RESIDUE NDP B 551
ChainResidue
BASP168
BMET169
BSER170
BARG211
BTHR215
BGLN250
BPHE252
BGLY253
BASN254
BVAL255
BGLU275
BSER276
BALA326
BGLY347
BALA348
BASN349
BASN374
BGLU550

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GTP B 553
ChainResidue
BHIS209
BHIS258
BARG261
BTYR262
BARG265
BGLU292

site_idAC5
Number of Residues19
DetailsBINDING SITE FOR RESIDUE NDP C 551
ChainResidue
CARG94
CASP168
CMET169
CSER170
CARG211
CTHR215
CGLN250
CPHE252
CGLY253
CASN254
CVAL255
CGLU275
CSER276
CALA326
CGLY347
CASN349
CASN374
CGLU550
CHOH556

site_idAC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GTP C 553
ChainResidue
CILE212
CSER213
CARG261
CTYR262
CARG265
CGLU292
CLYS446
CHIS450

site_idAC7
Number of Residues19
DetailsBINDING SITE FOR RESIDUE NDP D 551
ChainResidue
DARG94
DASP168
DMET169
DSER170
DARG211
DTHR215
DGLN250
DPHE252
DGLY253
DASN254
DVAL255
DGLU275
DSER276
DALA326
DGLY347
DALA348
DASN349
DASN374
DGLU550

site_idAC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GTP D 553
ChainResidue
DGLY210
DARG217
DARG261
DTYR262
DARG265
DGLU292
DHIS450
DHIS209

site_idAC9
Number of Residues19
DetailsBINDING SITE FOR RESIDUE NDP E 551
ChainResidue
ELYS134
EPRO167
EASP168
EMET169
ESER170
EARG211
ETHR215
EGLN250
EPHE252
EGLY253
EASN254
EVAL255
EGLU275
ESER276
EALA326
EGLY347
EALA348
EASN349
EASN374

site_idBC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GTP E 553
ChainResidue
EHIS209
EGLY210
ELEU257
EARG261
ETYR262
EARG265
EGLU292
ELYS446

site_idBC2
Number of Residues19
DetailsBINDING SITE FOR RESIDUE NDP F 551
ChainResidue
FARG94
FASP168
FMET169
FSER170
FARG211
FTHR215
FGLN250
FPHE252
FGLY253
FASN254
FVAL255
FGLU275
FSER276
FALA326
FGLY347
FALA348
FASN349
FASN374
FGLU550

site_idBC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GTP F 553
ChainResidue
FILE212
FSER213
FARG217
FHIS258
FARG261
FTYR262
FARG265
FLYS289
FGLU292
FHIS450

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE B1T E 552
ChainResidue
AARG146
AARG147
AB1T552
EGLU142

site_idBC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE B1T B 552
ChainResidue
BARG147
BMET150
CGLU142
CARG146
CB1T552

site_idBC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE B1T C 552
ChainResidue
BARG146
BTHR186
BB1T552
CARG146
CMET150

site_idBC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE B1T D 552
ChainResidue
AVAL498
DARG146
DMET150
FB1T552

site_idBC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE B1T A 552
ChainResidue
AGLU142
AARG146
AASP181
ASER185
EARG146
EARG147
EB1T552

site_idBC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE B1T F 552
ChainResidue
DGLU142
DARG146
DB1T552
FARG146
FARG147
FMET150

Functional Information from PROSITE/UniProt
site_idPS00074
Number of Residues14
DetailsGLFV_DEHYDROGENASE Glu / Leu / Phe / Val dehydrogenases active site. VpfGGAKaGvkiNP
ChainResidueDetails
AVAL120-PRO133

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsACT_SITE: ACT_SITE => ECO:0000255|PROSITE-ProRule:PRU10011
ChainResidueDetails
AGLY123
BGLY123
CGLY123
DGLY123
EGLY123
FGLY123

site_idSWS_FT_FI2
Number of Residues66
DetailsBINDING: BINDING => ECO:0000269|PubMed:11254391
ChainResidueDetails
AGLN81
AVAL378
AGLU384
BGLN81
BTHR87
BMET111
BALA116
BILE192
BGLY206
BGLY210
BSER259
ATHR87
BTYR262
BVAL378
BGLU384
CGLN81
CTHR87
CMET111
CALA116
CILE192
CGLY206
CGLY210
AMET111
CSER259
CTYR262
CVAL378
CGLU384
DGLN81
DTHR87
DMET111
DALA116
DILE192
DGLY206
AALA116
DGLY210
DSER259
DTYR262
DVAL378
DGLU384
EGLN81
ETHR87
EMET111
EALA116
EILE192
AILE192
EGLY206
EGLY210
ESER259
ETYR262
EVAL378
EGLU384
FGLN81
FTHR87
FMET111
FALA116
AGLY206
FILE192
FGLY206
FGLY210
FSER259
FTYR262
FVAL378
FGLU384
AGLY210
ASER259
ATYR262

site_idSWS_FT_FI3
Number of Residues12
DetailsBINDING: BINDING => ECO:0000269|PubMed:12653548
ChainResidueDetails
AASN390
ETHR456
FASN390
FTHR456
ATHR456
BASN390
BTHR456
CASN390
CTHR456
DASN390
DTHR456
EASN390

site_idSWS_FT_FI4
Number of Residues12
DetailsMOD_RES: N6-succinyllysine => ECO:0000250|UniProtKB:P26443
ChainResidueDetails
AASN8
EGLU140
FASN8
FGLU140
AGLU140
BASN8
BGLU140
CASN8
CGLU140
DASN8
DGLU140
EASN8

site_idSWS_FT_FI5
Number of Residues12
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P26443
ChainResidueDetails
AARG19
EASP68
FARG19
FASP68
AASP68
BARG19
BASP68
CARG19
CASP68
DARG19
DASP68
EARG19

site_idSWS_FT_FI6
Number of Residues54
DetailsMOD_RES: N6-succinyllysine; alternate => ECO:0000269|PubMed:22076378
ChainResidueDetails
AVAL24
BVAL24
BARG50
BASP102
BGLY303
BGLU355
BLEU397
BALA443
BTHR467
BALA485
CVAL24
AARG50
CARG50
CASP102
CGLY303
CGLU355
CLEU397
CALA443
CTHR467
CALA485
DVAL24
DARG50
AASP102
DASP102
DGLY303
DGLU355
DLEU397
DALA443
DTHR467
DALA485
EVAL24
EARG50
EASP102
AGLY303
EGLY303
EGLU355
ELEU397
EALA443
ETHR467
EALA485
FVAL24
FARG50
FASP102
FGLY303
AGLU355
FGLU355
FLEU397
FALA443
FTHR467
FALA485
ALEU397
AALA443
ATHR467
AALA485

site_idSWS_FT_FI7
Number of Residues18
DetailsMOD_RES: N6-acetyllysine => ECO:0000269|PubMed:22076378
ChainResidueDetails
AGLU30
DGLU30
DALA326
DVAL339
EGLU30
EALA326
EVAL339
FGLU30
FALA326
FVAL339
AALA326
AVAL339
BGLU30
BALA326
BVAL339
CGLU30
CALA326
CVAL339

site_idSWS_FT_FI8
Number of Residues6
DetailsMOD_RES: Phosphotyrosine => ECO:0000250|UniProtKB:P26443
ChainResidueDetails
AILE75
BILE75
CILE75
DILE75
EILE75
FILE75

site_idSWS_FT_FI9
Number of Residues6
DetailsMOD_RES: N6-(2-hydroxyisobutyryl)lysine => ECO:0000250|UniProtKB:P00367
ChainResidueDetails
ATHR87
BTHR87
CTHR87
DTHR87
ETHR87
FTHR87

site_idSWS_FT_FI10
Number of Residues24
DetailsMOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:P26443
ChainResidueDetails
AMET111
CALA127
CGLU151
CPHE266
DMET111
DALA127
DGLU151
DPHE266
EMET111
EALA127
EGLU151
AALA127
EPHE266
FMET111
FALA127
FGLU151
FPHE266
AGLU151
APHE266
BMET111
BALA127
BGLU151
BPHE266
CMET111

site_idSWS_FT_FI11
Number of Residues6
DetailsMOD_RES: ADP-ribosylcysteine => ECO:0000250|UniProtKB:P00367
ChainResidueDetails
ATHR112
BTHR112
CTHR112
DTHR112
ETHR112
FTHR112

site_idSWS_FT_FI12
Number of Residues48
DetailsMOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P26443
ChainResidueDetails
AGLY123
BILE131
BILE286
BGLU292
BPRO305
BGLN330
BLEU417
BLYS420
CGLY123
CILE131
CILE286
AILE131
CGLU292
CPRO305
CGLN330
CLEU417
CLYS420
DGLY123
DILE131
DILE286
DGLU292
DPRO305
AILE286
DGLN330
DLEU417
DLYS420
EGLY123
EILE131
EILE286
EGLU292
EPRO305
EGLN330
ELEU417
AGLU292
ELYS420
FGLY123
FILE131
FILE286
FGLU292
FPRO305
FGLN330
FLEU417
FLYS420
APRO305
AGLN330
ALEU417
ALYS420
BGLY123

site_idSWS_FT_FI13
Number of Residues12
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P00367
ChainResidueDetails
APRO167
EPRO324
FPRO167
FPRO324
APRO324
BPRO167
BPRO324
CPRO167
CPRO324
DPRO167
DPRO324
EPRO167

site_idSWS_FT_FI14
Number of Residues6
DetailsMOD_RES: Phosphothreonine => ECO:0000250|UniProtKB:P10860
ChainResidueDetails
AGLY350
BGLY350
CGLY350
DGLY350
EGLY350
FGLY350

site_idSWS_FT_FI15
Number of Residues6
DetailsMOD_RES: Phosphotyrosine => ECO:0000250|UniProtKB:P00367
ChainResidueDetails
AGLY452
BGLY452
CGLY452
DGLY452
EGLY452
FGLY452

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1hrd
ChainResidueDetails
ALYS126
AASP168

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1hrd
ChainResidueDetails
BLYS126
BASP168

site_idCSA3
Number of Residues2
DetailsAnnotated By Reference To The Literature 1hrd
ChainResidueDetails
CLYS126
CASP168

site_idCSA4
Number of Residues2
DetailsAnnotated By Reference To The Literature 1hrd
ChainResidueDetails
DLYS126
DASP168

site_idCSA5
Number of Residues2
DetailsAnnotated By Reference To The Literature 1hrd
ChainResidueDetails
ELYS126
EASP168

site_idCSA6
Number of Residues2
DetailsAnnotated By Reference To The Literature 1hrd
ChainResidueDetails
FLYS126
FASP168

219140

PDB entries from 2024-05-01

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