3EI8
Crystal structure of K270N variant of LL-diaminopimelate aminotransferase from Arabidopsis thaliana complexed with LL-DAP: External aldimine form
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005507 | molecular_function | copper ion binding |
A | 0005829 | cellular_component | cytosol |
A | 0005886 | cellular_component | plasma membrane |
A | 0008483 | molecular_function | transaminase activity |
A | 0009058 | biological_process | biosynthetic process |
A | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
A | 0009507 | cellular_component | chloroplast |
A | 0009570 | cellular_component | chloroplast stroma |
A | 0009862 | biological_process | systemic acquired resistance, salicylic acid mediated signaling pathway |
A | 0010285 | molecular_function | L,L-diaminopimelate aminotransferase activity |
A | 0030170 | molecular_function | pyridoxal phosphate binding |
B | 0005507 | molecular_function | copper ion binding |
B | 0005829 | cellular_component | cytosol |
B | 0005886 | cellular_component | plasma membrane |
B | 0008483 | molecular_function | transaminase activity |
B | 0009058 | biological_process | biosynthetic process |
B | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
B | 0009507 | cellular_component | chloroplast |
B | 0009570 | cellular_component | chloroplast stroma |
B | 0009862 | biological_process | systemic acquired resistance, salicylic acid mediated signaling pathway |
B | 0010285 | molecular_function | L,L-diaminopimelate aminotransferase activity |
B | 0030170 | molecular_function | pyridoxal phosphate binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 14 |
Details | BINDING SITE FOR RESIDUE PLP A 433 |
Chain | Residue |
A | GLY127 |
A | SER269 |
A | ARG278 |
A | HOH679 |
B | TYR94 |
B | ASN309 |
A | ALA128 |
A | LYS129 |
A | TYR152 |
A | CYS205 |
A | ASN209 |
A | ASP237 |
A | TYR240 |
A | SER267 |
site_id | AC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 A 434 |
Chain | Residue |
A | LYS101 |
A | ARG104 |
A | ASP119 |
A | ASP120 |
site_id | AC3 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL A 435 |
Chain | Residue |
A | LYS81 |
A | SER92 |
A | ASN313 |
A | HOH547 |
A | HOH624 |
A | HOH766 |
A | HOH903 |
site_id | AC4 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE GOL A 436 |
Chain | Residue |
A | PHE111 |
A | SER238 |
A | MET242 |
A | ARG250 |
A | SER251 |
A | GLU264 |
A | ALA266 |
A | TYR271 |
A | TRP281 |
A | HOH484 |
site_id | AC5 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE GOL A 437 |
Chain | Residue |
A | PHE111 |
A | GLY113 |
A | LEU115 |
A | GLU254 |
A | HOH504 |
A | HOH945 |
B | THR110 |
B | HOH790 |
site_id | AC6 |
Number of Residues | 22 |
Details | BINDING SITE FOR RESIDUE PL5 B 433 |
Chain | Residue |
A | TYR94 |
A | ASN309 |
A | HOH486 |
B | TYR37 |
B | PHE39 |
B | ILE63 |
B | GLY64 |
B | GLY127 |
B | ALA128 |
B | LYS129 |
B | TYR152 |
B | TYR155 |
B | CYS205 |
B | ASN209 |
B | ASP237 |
B | TYR240 |
B | SER267 |
B | SER269 |
B | ARG278 |
B | ARG404 |
B | HOH926 |
B | HOH1089 |
site_id | AC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 B 434 |
Chain | Residue |
B | LYS101 |
B | ARG104 |
B | ASP120 |
site_id | AC8 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE GOL B 435 |
Chain | Residue |
B | LYS81 |
B | SER92 |
B | ASN313 |
B | GLN316 |
B | HOH854 |
B | HOH996 |
B | HOH1145 |
B | HOH1200 |
site_id | AC9 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE GOL B 436 |
Chain | Residue |
B | PHE111 |
B | SER238 |
B | MET242 |
B | ARG250 |
B | SER251 |
B | GLU264 |
B | ALA266 |
B | TYR271 |
B | TRP281 |
B | HOH786 |
B | HOH929 |
B | HOH1104 |
site_id | BC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL B 437 |
Chain | Residue |
A | THR110 |
B | TYR112 |
B | GLY113 |
B | HOH790 |
B | HOH901 |
B | HOH1081 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000269|PubMed:18952095 |
Chain | Residue | Details |
A | TYR37 | |
B | TYR37 |
site_id | SWS_FT_FI2 |
Number of Residues | 22 |
Details | BINDING: BINDING => ECO:0000269|PubMed:17583737, ECO:0000269|PubMed:18952095 |
Chain | Residue | Details |
A | GLY64 | |
A | ALA128 | |
A | LYS129 | |
A | TYR152 | |
A | ASN209 | |
A | TYR240 | |
A | SER267 | |
A | ARG278 | |
A | ASN309 | |
A | ARG404 | |
B | GLY64 | |
B | TYR94 | |
B | ALA128 | |
B | LYS129 | |
B | TYR152 | |
B | ASN209 | |
B | TYR240 | |
B | SER267 | |
B | ARG278 | |
B | ASN309 | |
B | ARG404 | |
A | TYR94 |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | MOD_RES: N6-(pyridoxal phosphate)lysine => ECO:0000269|PubMed:18952095, ECO:0000305|PubMed:17583737 |
Chain | Residue | Details |
A | ASN270 | |
B | ASN270 |