3EBG

Structure of the M1 Alanylaminopeptidase from malaria

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0006508	biological_process	proteolysis
A	0008237	molecular_function	metallopeptidase activity
A	0008270	molecular_function	zinc ion binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	6
Details	BINDING SITE FOR RESIDUE ZN A 1

Chain	Residue
A	HOH86
A	HIS496
A	HIS500
A	GLU519
A	MG1085
A	HOH1655

---

site_id	AC2
Number of Residues	8
Details	BINDING SITE FOR RESIDUE MG A1085

Chain	Residue
A	HOH1149
A	HOH1222
A	HOH1456
A	HOH1519
A	HOH1655
A	ZN1
A	HOH86
A	TYR580

---

site_id	AC3
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG A 2

Chain	Residue
A	HOH83
A	HOH186
A	GLY250
A	HOH1385
A	HOH1445
A	HOH1520

---

site_id	AC4
Number of Residues	10
Details	BINDING SITE FOR RESIDUE GOL A 3

Chain	Residue
A	HOH82
A	HOH119
A	LYS479
A	TYR880
A	PHE881
A	VAL887
A	ASP888
A	GLN891
A	ARG895
A	TYR925

---

site_id	AC5
Number of Residues	9
Details	BINDING SITE FOR RESIDUE GOL A 4

Chain	Residue
A	HOH46
A	VAL459
A	GLY460
A	ASN471
A	ASN473
A	SER474
A	ARG489
A	ARG997
A	HOH1628

---

site_id	AC6
Number of Residues	7
Details	BINDING SITE FOR RESIDUE GOL A 5

Chain	Residue
A	HOH144
A	HIS653
A	LYS676
A	TYR741
A	ASN835
A	HOH1603
A	HOH1621

---

site_id	AC7
Number of Residues	3
Details	BINDING SITE FOR RESIDUE GOL A 6

Chain	Residue
A	THR577
A	TYR580
A	ASP581

---

site_id	AC8
Number of Residues	6
Details	BINDING SITE FOR RESIDUE GOL A 7

Chain	Residue
A	GLU957
A	ASN992
A	ASP995
A	HOH1278
A	HOH1370
A	HOH1411

---

Functional Information from PROSITE/UniProt

site_id	PS00142
Number of Residues	10
Details	ZINC_PROTEASE Neutral zinc metallopeptidases, zinc-binding region signature. VVGHEYFHQY

Chain	Residue	Details
A	VAL493-TYR502

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	1
Details	ACT_SITE: Proton acceptor => ECO:0000250|UniProtKB:P15144

Chain	Residue	Details
A	GLU497

---

site_id	SWS_FT_FI2
Number of Residues	3
Details	BINDING: BINDING => ECO:0000305|PubMed:19196988, ECO:0000305|PubMed:21366301, ECO:0007744|PDB:3EBH, ECO:0007744|PDB:3EBI, ECO:0007744|PDB:3Q43

Chain	Residue	Details
A	GLU319
A	GLY460
A	GLU463

---

site_id	SWS_FT_FI3
Number of Residues	1
Details	BINDING: BINDING => ECO:0000305|PubMed:19196988, ECO:0000305|PubMed:21366301, ECO:0007744|PDB:3EBH, ECO:0007744|PDB:3Q43

Chain	Residue	Details
A	ALA461

---

site_id	SWS_FT_FI4
Number of Residues	3
Details	BINDING: BINDING => ECO:0000269|PubMed:19196988, ECO:0000269|PubMed:21366301, ECO:0000269|PubMed:21844374, ECO:0000269|PubMed:23713488, ECO:0000269|PubMed:23897806, ECO:0000269|PubMed:25299353, ECO:0000269|PubMed:25645579, ECO:0000269|PubMed:26406322, ECO:0000269|PubMed:26807544, ECO:0000269|PubMed:30537832, ECO:0000269|PubMed:32182520, ECO:0000269|Ref.21, ECO:0000269|DOI:10.1016/j.cclet.2021.09.102, ECO:0000312|PDB:3T8V, ECO:0000312|PDB:5Y1Q, ECO:0007744|PDB:3EBG, ECO:0007744|PDB:3EBH, ECO:0007744|PDB:3EBI, ECO:0007744|PDB:3Q43, ECO:0007744|PDB:3Q44, ECO:0007744|PDB:4J3B, ECO:0007744|PDB:4K5L, ECO:0007744|PDB:4K5M, ECO:0007744|PDB:4K5N, ECO:0007744|PDB:4K5O, ECO:0007744|PDB:4K5P, ECO:0007744|PDB:4R5T, ECO:0007744|PDB:4R5V, ECO:0007744|PDB:4R5X, ECO:0007744|PDB:4X2U, ECO:0007744|PDB:4ZQT, ECO:0007744|PDB:4ZW3, ECO:0007744|PDB:4ZW5, ECO:0007744|PDB:4ZW6, ECO:0007744|PDB:4ZW7, ECO:0007744|PDB:4ZW8, ECO:0007744|PDB:4ZX3, ECO:0007744|PDB:4ZX4, ECO:0007744|PDB:4ZX5, ECO:0007744|PDB:4ZX6, ECO:0007744|PDB:5XM7, ECO:0007744|PDB:5Y19, ECO:0007744|PDB:5Y1H, ECO:0007744|PDB:5Y1K, ECO:0007744|PDB:5Y1R, ECO:0007744|PDB:5Y1S, ECO:0007744|PDB:5Y1T, ECO:0007744|PDB:5Y1V, ECO:0007744|PDB:5Y1W, ECO:0007744|PDB:5Y1X, ECO:0007744|PDB:5Y3I, ECO:0007744|PDB:6EA1, ECO:0007744|PDB:6EA2, ECO:0007744|PDB:6EAA, ECO:0007744|PDB:6EAB, ECO:0007744|PDB:6EE3, ECO:0007744|PDB:6EE4, ECO:0007744|PDB:6EE6, ECO:0007744|PDB:6EED, ECO:0007744|PDB:6SBQ, ECO:0007744|PDB:6SBR

Chain	Residue	Details
A	HIS496
A	HIS500
A	GLU519

---

site_id	SWS_FT_FI5
Number of Residues	1
Details	SITE: Important for substrate specificity => ECO:0000269|PubMed:23897806

Chain	Residue	Details
A	VAL459

---

site_id	SWS_FT_FI6
Number of Residues	1
Details	SITE: Transition state stabilizer => ECO:0000250|UniProtKB:P15144

Chain	Residue	Details
A	TYR580

---

site_id	SWS_FT_FI7
Number of Residues	1
Details	SITE: Cleavage => ECO:0000305|PubMed:21659511

Chain	Residue	Details
A	GLN795

---

Catalytic Information from CSA

site_id	CSA1
Number of Residues	3
Details	Annotated By Reference To The Literature 1h19

Chain	Residue	Details
A	TYR580
A	GLU463
A	GLU497

---