Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

3E7N

Crystal structure of d-ribose high-affinity transport system from salmonella typhimurium lt2

Replaces: 3DSA

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0005737	cellular_component	cytoplasm
A	0005829	cellular_component	cytosol
A	0005996	biological_process	monosaccharide metabolic process
A	0016853	molecular_function	isomerase activity
A	0016866	molecular_function	intramolecular transferase activity
A	0016872	molecular_function	intramolecular lyase activity
A	0019303	biological_process	D-ribose catabolic process
A	0048029	molecular_function	monosaccharide binding
A	0062193	molecular_function	D-ribose pyranase activity
B	0005737	cellular_component	cytoplasm
B	0005829	cellular_component	cytosol
B	0005996	biological_process	monosaccharide metabolic process
B	0016853	molecular_function	isomerase activity
B	0016866	molecular_function	intramolecular transferase activity
B	0016872	molecular_function	intramolecular lyase activity
B	0019303	biological_process	D-ribose catabolic process
B	0048029	molecular_function	monosaccharide binding
B	0062193	molecular_function	D-ribose pyranase activity
C	0005737	cellular_component	cytoplasm
C	0005829	cellular_component	cytosol
C	0005996	biological_process	monosaccharide metabolic process
C	0016853	molecular_function	isomerase activity
C	0016866	molecular_function	intramolecular transferase activity
C	0016872	molecular_function	intramolecular lyase activity
C	0019303	biological_process	D-ribose catabolic process
C	0048029	molecular_function	monosaccharide binding
C	0062193	molecular_function	D-ribose pyranase activity
D	0005737	cellular_component	cytoplasm
D	0005829	cellular_component	cytosol
D	0005996	biological_process	monosaccharide metabolic process
D	0016853	molecular_function	isomerase activity
D	0016866	molecular_function	intramolecular transferase activity
D	0016872	molecular_function	intramolecular lyase activity
D	0019303	biological_process	D-ribose catabolic process
D	0048029	molecular_function	monosaccharide binding
D	0062193	molecular_function	D-ribose pyranase activity
E	0005737	cellular_component	cytoplasm
E	0005829	cellular_component	cytosol
E	0005996	biological_process	monosaccharide metabolic process
E	0016853	molecular_function	isomerase activity
E	0016866	molecular_function	intramolecular transferase activity
E	0016872	molecular_function	intramolecular lyase activity
E	0019303	biological_process	D-ribose catabolic process
E	0048029	molecular_function	monosaccharide binding
E	0062193	molecular_function	D-ribose pyranase activity
F	0005737	cellular_component	cytoplasm
F	0005829	cellular_component	cytosol
F	0005996	biological_process	monosaccharide metabolic process
F	0016853	molecular_function	isomerase activity
F	0016866	molecular_function	intramolecular transferase activity
F	0016872	molecular_function	intramolecular lyase activity
F	0019303	biological_process	D-ribose catabolic process
F	0048029	molecular_function	monosaccharide binding
F	0062193	molecular_function	D-ribose pyranase activity
G	0005737	cellular_component	cytoplasm
G	0005829	cellular_component	cytosol
G	0005996	biological_process	monosaccharide metabolic process
G	0016853	molecular_function	isomerase activity
G	0016866	molecular_function	intramolecular transferase activity
G	0016872	molecular_function	intramolecular lyase activity
G	0019303	biological_process	D-ribose catabolic process
G	0048029	molecular_function	monosaccharide binding
G	0062193	molecular_function	D-ribose pyranase activity
H	0005737	cellular_component	cytoplasm
H	0005829	cellular_component	cytosol
H	0005996	biological_process	monosaccharide metabolic process
H	0016853	molecular_function	isomerase activity
H	0016866	molecular_function	intramolecular transferase activity
H	0016872	molecular_function	intramolecular lyase activity
H	0019303	biological_process	D-ribose catabolic process
H	0048029	molecular_function	monosaccharide binding
H	0062193	molecular_function	D-ribose pyranase activity
I	0005737	cellular_component	cytoplasm
I	0005829	cellular_component	cytosol
I	0005996	biological_process	monosaccharide metabolic process
I	0016853	molecular_function	isomerase activity
I	0016866	molecular_function	intramolecular transferase activity
I	0016872	molecular_function	intramolecular lyase activity
I	0019303	biological_process	D-ribose catabolic process
I	0048029	molecular_function	monosaccharide binding
I	0062193	molecular_function	D-ribose pyranase activity
J	0005737	cellular_component	cytoplasm
J	0005829	cellular_component	cytosol
J	0005996	biological_process	monosaccharide metabolic process
J	0016853	molecular_function	isomerase activity
J	0016866	molecular_function	intramolecular transferase activity
J	0016872	molecular_function	intramolecular lyase activity
J	0019303	biological_process	D-ribose catabolic process
J	0048029	molecular_function	monosaccharide binding
J	0062193	molecular_function	D-ribose pyranase activity
K	0005737	cellular_component	cytoplasm
K	0005829	cellular_component	cytosol
K	0005996	biological_process	monosaccharide metabolic process
K	0016853	molecular_function	isomerase activity
K	0016866	molecular_function	intramolecular transferase activity
K	0016872	molecular_function	intramolecular lyase activity
K	0019303	biological_process	D-ribose catabolic process
K	0048029	molecular_function	monosaccharide binding
K	0062193	molecular_function	D-ribose pyranase activity
L	0005737	cellular_component	cytoplasm
L	0005829	cellular_component	cytosol
L	0005996	biological_process	monosaccharide metabolic process
L	0016853	molecular_function	isomerase activity
L	0016866	molecular_function	intramolecular transferase activity
L	0016872	molecular_function	intramolecular lyase activity
L	0019303	biological_process	D-ribose catabolic process
L	0048029	molecular_function	monosaccharide binding
L	0062193	molecular_function	D-ribose pyranase activity
M	0005737	cellular_component	cytoplasm
M	0005829	cellular_component	cytosol
M	0005996	biological_process	monosaccharide metabolic process
M	0016853	molecular_function	isomerase activity
M	0016866	molecular_function	intramolecular transferase activity
M	0016872	molecular_function	intramolecular lyase activity
M	0019303	biological_process	D-ribose catabolic process
M	0048029	molecular_function	monosaccharide binding
M	0062193	molecular_function	D-ribose pyranase activity
N	0005737	cellular_component	cytoplasm
N	0005829	cellular_component	cytosol
N	0005996	biological_process	monosaccharide metabolic process
N	0016853	molecular_function	isomerase activity
N	0016866	molecular_function	intramolecular transferase activity
N	0016872	molecular_function	intramolecular lyase activity
N	0019303	biological_process	D-ribose catabolic process
N	0048029	molecular_function	monosaccharide binding
N	0062193	molecular_function	D-ribose pyranase activity
O	0005737	cellular_component	cytoplasm
O	0005829	cellular_component	cytosol
O	0005996	biological_process	monosaccharide metabolic process
O	0016853	molecular_function	isomerase activity
O	0016866	molecular_function	intramolecular transferase activity
O	0016872	molecular_function	intramolecular lyase activity
O	0019303	biological_process	D-ribose catabolic process
O	0048029	molecular_function	monosaccharide binding
O	0062193	molecular_function	D-ribose pyranase activity

Functional Information from PDB Data

site_id	AC1
Number of Residues	6
Details	BINDING SITE FOR RESIDUE EDO A 300

Chain	Residue
A	ASN-1
A	ASP28
A	GLY30
A	LEU31
A	TYR128
B	PHE139

site_id	AC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE EDO B 300

Chain	Residue
B	TYR128
C	PHE139
B	ASP28
B	GLY30
B	LEU31

site_id	AC3
Number of Residues	5
Details	BINDING SITE FOR RESIDUE EDO C 300

Chain	Residue
C	ASP28
C	GLY30
C	LEU31
C	TYR128
D	PHE139

site_id	AC4
Number of Residues	4
Details	BINDING SITE FOR RESIDUE EDO D 300

Chain	Residue
D	ASP28
D	LEU31
D	TYR128
D	ASN130

site_id	AC5
Number of Residues	4
Details	BINDING SITE FOR RESIDUE EDO E 300

Chain	Residue
E	ASP28
E	GLY30
E	LEU31
E	TYR128

site_id	AC6
Number of Residues	4
Details	BINDING SITE FOR RESIDUE EDO F 300

Chain	Residue
F	ASP28
F	HIS106
F	TYR128
F	HOH303

site_id	AC7
Number of Residues	6
Details	BINDING SITE FOR RESIDUE EDO G 300

Chain	Residue
G	ASP28
G	GLY30
G	LEU31
G	TYR128
G	ASN130
O	ASN-1

site_id	AC8
Number of Residues	4
Details	BINDING SITE FOR RESIDUE EDO H 300

Chain	Residue
H	ASP28
H	LEU31
H	TYR128
H	ASN130

site_id	AC9
Number of Residues	3
Details	BINDING SITE FOR RESIDUE EDO J 300

Chain	Residue
J	ASP28
J	LEU31
J	ASN130

site_id	BC1
Number of Residues	4
Details	BINDING SITE FOR RESIDUE EDO K 300

Chain	Residue
K	ASP28
K	LEU31
K	TYR128
K	ASN130

site_id	BC2
Number of Residues	4
Details	BINDING SITE FOR RESIDUE EDO L 300

Chain	Residue
L	ASP28
L	GLY30
L	LEU31
L	TYR128

site_id	BC3
Number of Residues	3
Details	BINDING SITE FOR RESIDUE EDO N 300

Chain	Residue
N	ASP28
N	HIS106
N	TYR128

site_id	BC4
Number of Residues	3
Details	BINDING SITE FOR RESIDUE EDO O 300

Chain	Residue
K	HIS20
O	ASP28
O	ASN130

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	15
Details	ACT_SITE: Proton donor => ECO:0000255\|HAMAP-Rule:MF_01661

Chain	Residue	Details
A	HIS20
J	HIS20
K	HIS20
L	HIS20
M	HIS20
N	HIS20
O	HIS20
B	HIS20
C	HIS20
D	HIS20
E	HIS20
F	HIS20
G	HIS20
H	HIS20
I	HIS20

site_id	SWS_FT_FI2
Number of Residues	45
Details	BINDING: BINDING => ECO:0000255\|HAMAP-Rule:MF_01661

Chain	Residue	Details
A	ASP28
D	ASP28
D	HIS106
D	TYR128
E	ASP28
E	HIS106
E	TYR128
F	ASP28
F	HIS106
F	TYR128
G	ASP28
A	HIS106
G	HIS106
G	TYR128
H	ASP28
H	HIS106
H	TYR128
I	ASP28
I	HIS106
I	TYR128
J	ASP28
J	HIS106
A	TYR128
J	TYR128
K	ASP28
K	HIS106
K	TYR128
L	ASP28
L	HIS106
L	TYR128
M	ASP28
M	HIS106
M	TYR128
B	ASP28
N	ASP28
N	HIS106
N	TYR128
O	ASP28
O	HIS106
O	TYR128
B	HIS106
B	TYR128
C	ASP28
C	HIS106
C	TYR128

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)