Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3E5S

Crystal structure of Staphylococcal nuclease variant Delta+PHS L103K at cryogenic temperature

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0004518molecular_functionnuclease activity
B0003676molecular_functionnucleic acid binding
B0004518molecular_functionnuclease activity
Functional Information from PDB Data
site_idAC1
Number of Residues15
DetailsBINDING SITE FOR RESIDUE THP A 150
ChainResidue
AARG35
AHOH157
AHOH159
AHOH160
AHOH183
AHOH189
AHOH208
ALYS84
ATYR85
AARG87
ATYR113
ATYR115
ALYS127
ACA151
AHOH153

site_idAC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE CA A 151
ChainResidue
AASP21
AARG35
AASP40
AGLU43
ATHP150
AHOH156
AHOH208
AHOH224

site_idAC3
Number of Residues17
DetailsBINDING SITE FOR RESIDUE THP B 150
ChainResidue
BARG35
BLYS84
BTYR85
BARG87
BLEU89
BTYR113
BTYR115
BLYS127
BCA151
BHOH153
BHOH159
BHOH166
BHOH172
BHOH183
BHOH196
BHOH205
BHOH226

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA B 151
ChainResidue
BASP21
BASP40
BTHP150
BHOH155
BHOH167

Functional Information from PROSITE/UniProt
site_idPS01123
Number of Residues25
DetailsTNASE_1 Thermonuclease family signature 1. DGDTVkLmykgqpmtf.RLllVDtPE
ChainResidueDetails
AASP19-GLU43

site_idPS01284
Number of Residues11
DetailsTNASE_2 Thermonuclease family signature 2. DKYGRgLAyIY
ChainResidueDetails
AASP83-TYR93

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsACT_SITE: ACT_SITE => ECO:0000269|PubMed:288045
ChainResidueDetails
AARG35
AGLU43
ATYR93
BARG35
BGLU43
BTYR93

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING:
ChainResidueDetails
AASP21
AASP40
BASP40
BTHR41
ATHR41
BASP21

Catalytic Information from CSA
site_idMCSA1
Number of Residues6
DetailsM-CSA 165
ChainResidueDetails
AASP21metal ligand
AARG35electrostatic stabiliser, hydrogen bond donor
AASP40metal ligand
ATHR41metal ligand
AGLU43hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
ATYR93electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor

site_idMCSA2
Number of Residues6
DetailsM-CSA 165
ChainResidueDetails
BASP21metal ligand
BARG35electrostatic stabiliser, hydrogen bond donor
BASP40metal ligand
BTHR41metal ligand
BGLU43hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
BTYR93electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon